Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9751 93.3 4e-14 seq10024 91.5 2e-13 seq12078 82.4 8e-11 >seq9751 Length=50749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 287/438 (66%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| |||| ||||| || ||||| ||||| || || || | ||| || || Sbjct 49610 TTTCTGATACTCACCCACTCTCTTCTCGAAGAAATTAGTTTTCCCCTGCAACGAAATCAG 49551 Query 21244 TTCCATAAAATCAAATGGATTTTCAG-ATT-TAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| |||||||||||||| || ||| || || || ||| |||| | Sbjct 49550 TTCCATCCAATCAAATGGATTTGCAACATTGTACATCTTCCCGTAC--CCCAACGCGCCC 49493 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | | | ||| ||||| || || || || |||| |||||| || | |||||||| | | Sbjct 49492 AGCAGCCGATCCGCTACGAACTCGATGTACTGACTCATTAAATCGCCGTTCATACCAACC 49433 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 ||| || ||||| | || || | |||||| | ||||| || ||| Sbjct 49432 AATGCGCAGGGCAGAGCGTCGCACACGAACTCCCTCTCTATATACACGGCCTCTTTTATT 49373 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 || | | | | | ||| | | || | | | | ||| ||| || || Sbjct 49372 ATCCCTTTCACGCGCTCTTCACTGAGCTTAGACCGGAGTAGATCGTACAACAAGCAAGCG 49313 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 |||||||| || | ||| || || | |||||| || || || || ||||| |||||| Sbjct 49312 AAATCACAGTGGAGACCCTCGTCTCGCGATATTAACTCGTTTGAGAAAGTTAATCCGGGC 49253 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAAAGAAAATGCC 21600 ||||| || | |||||| ||||| |||| || |||| || ||| || || || || || Sbjct 49252 ATTAAACCGCGCTTTTTCAACCAGAATA-TGGCGCAGAAACTTCCGGAGAAAAAGATCCC 49194 Query 21601 CTCAACGGCAGCAAATGC 21618 ||| ||| |||||| || Sbjct 49193 CTCGACGCAAGCAAAGGC 49176 >seq10024 Length=53621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || |||||||| || || | |||||||| | ||||| ||||| || | Sbjct 15005 ACAGCAAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGA 14946 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| || |||||||| || | |||||| |||||||||| || |||| || ||| Sbjct 14945 AAGTTAATCCAGGCATTAACCCGCGCTTTTTCAACCAAAATA-TGGCGCAGAAACTTCCA 14887 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 || || || || ||||||| | |||||| || Sbjct 14886 GAGAAAAATATCCCCTCAATGCAAGCAAAAGC 14855 >seq12078 Length=35335 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || |||||||| || || | |||||||| | ||||| || || || | Sbjct 4619 ACAGCAAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGA 4560 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| || ||||| || || | |||||| |||||||||| || |||| || ||| Sbjct 4559 AAGTTAATCCAGGCATCAACCCGCGCTTTTTCAACCAAAATA-TGGCGCAGAAACTTCCA 4501 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 || || || || ||||||| | |||||| || Sbjct 4500 GAGAAAAAGATCCCCTCAATGCAAGCAAAAGC 4469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531385600885120