Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10024 96.9 9e-15 seq12078 87.8 5e-12 >seq10024 Length=53621 Score = 96.9 bits (106), Expect = 9e-15 Identities = 330/506 (65%), Gaps = 9/506 (2%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497 || || || || ||||| |||||||||| ||| | | | ||||| || || | Sbjct 14792 AAAAAAGCCGAGTGGGCTATGAAATGGATCAACGGCGGAGAAACTTTCGCCGAGCGGTTG 14851 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 || || |||||| |||| || || || || |||||| || || || || |||||| Sbjct 14852 ATCGCTTTTGCTTGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTGCGCCATATTTTGG 14911 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 | ||||| || | | ||||| || |||| || || ||||||||||| |||||| Sbjct 14912 TTGAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCCAATGAGTTAATCTCGCGAGAT 14971 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT 22677 || || || || ||||||||| || |||| || || || | | ||| || || Sbjct 14972 GAAGGCCTCCACTGCGATTTTGCTTGCTTGCTGTA-CGATCTCCTC-CGGTCA-AAGCTG 15028 Query 22678 CCATATGAAACTGT--ACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTA 22735 | || || | |||| || | | | || ||||| | || | ||| Sbjct 15029 AGCGAAGAGCGCGTGAAGGGGATAGTA--AGAGAGGCCGTTGACATAGAGAGAGAGTTTG 15086 Query 22736 TTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATAT 22794 | ||||| || || || || || | | || || || ||| | |||||| || Sbjct 15087 TGTGCGACGCTCTTCCCTGTGCGT-TAGTAGGGATTAACAGCGATTTGATGAGTCAGTAC 15145 Query 22795 ATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTC 22854 || | || || || ||||| | || | | || || | || ||| || || Sbjct 15146 ATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACGGGAAAATTTACAATGTT 15205 Query 22855 GTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAA 22914 || || || || || ||||||||||| ||||| | |||| || |||||||||||||| Sbjct 15206 GTAAACCCTTTCGATTGGATGGAACTGATTTCGTTGCAAGGGAAAACCAATTTCTTCGAG 15265 Query 22915 AAAAGAGTTGGTGAATACCAAAAAGC 22940 |||||||||||||| ||||| ||||| Sbjct 15266 AAAAGAGTTGGTGAGTACCAGAAAGC 15291 >seq12078 Length=35335 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 || || ||||| ||||||||||| ||||| | |||| || |||||||||||||| ||| Sbjct 4823 AACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGGAAAACCAATTTCTTCGAGAAA 4882 Query 22918 AGAGTTGGTGAATACCAAAAAGC 22940 |||||||| || ||||| ||||| Sbjct 4883 AGAGTTGGCGAGTACCAGAAAGC 4905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302059610995616