Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1278 113 4e-20 seq9733 107 2e-18 seq2335 102 7e-17 seq10 102 7e-17 seq11709 98.7 8e-16 seq1833 98.7 8e-16 seq8977 96.9 3e-15 seq14711 95.1 1e-14 seq7474 93.3 4e-14 seq3967 89.7 4e-13 seq433 89.7 4e-13 seq3224 84.2 2e-11 >seq1278 Length=225562 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || |||||||| ||||||| ||||||||||| |||| ||| Sbjct 157848 ATGCAGATCTTCGTCAAAACTTTGACCGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 157907 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || ||| ||||||||||| ||||| || || Sbjct 157908 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGACCAG 157967 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| || || ||||||||||||||| | ||| |||| ||||| ||| Sbjct 157968 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 158027 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| ||||| || || || | || |||||||| || ||||| Sbjct 158028 ATACAAAAGGAATCCACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 158074 >seq9733 Length=51005 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || |||| || ||||||||||| |||| ||| Sbjct 37197 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 37138 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || ||| ||||||||||| ||||| ||||| Sbjct 37137 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 37078 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| || ||||||||||||||| | ||| |||| ||||| ||| Sbjct 37077 CAGAGGTTGATTTTTGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 37018 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || ||| | || |||||||| || ||||| Sbjct 37017 ATTCAGAAGGAATCAACTCTTCATCTTGTCTTGCGTCTTCGTGGTGG 36971 >seq2335 Length=171082 Score = 102 bits (112), Expect = 7e-17 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| ||||| ||||| ||| | Sbjct 23448 ATGCAGATTTTTGTAAAGACTTTGACTGGGAAAACGATTACTTTGGAAGTTGAAAGCTCG 23507 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 ||| | ||| | || || || ||| ||||| ||||| | |||| || |||| Sbjct 23508 GATACGATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGG-GATCCCACCGGATCA 23566 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || ||||||||||||||| | ||| |||| |||||||| Sbjct 23567 GCAGAGGCTCATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTTTGGCTGATTATAA 23626 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGT-GGCAATAAAT 111421 ||| || ||||| || || || || | || | ||||| || ||| |||| ||||| Sbjct 23627 TATTCAGAAAGAGTCCACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGGCAGTAAAT 23683 >seq10 Length=577822 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || ||||| || || ||||||||||||| || ||| |||| |||| Sbjct 562177 AATGCAGATCTTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTC 562118 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || || ||| || || ||||| | ||| ||||| Sbjct 562117 GGATACGATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCA 562058 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| |||||||||||||| ||| | ||| | || |||||||| Sbjct 562057 GCAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 561998 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || |||||||| ||||| || || | || | ||||| || |||||| Sbjct 561997 CATTCAAAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 561949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || ||||| || || ||||||||||||| || ||| |||| |||| Sbjct 542960 AATGCAGATATTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTC 542901 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || || ||| || || ||||| | ||| ||||| Sbjct 542900 TGATACAATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCA 542841 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| |||||||||||||| ||| | ||| | || |||||||| Sbjct 542840 GCAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 542781 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||| ||||| || || | || | ||||| || |||||| Sbjct 542780 CATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 542732 >seq11709 Length=37133 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || |||| || |||||||||||| |||| ||| | Sbjct 7746 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACCCTGGAGGTGGAGAGCTCT 7687 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || || ||| ||||||||||| ||||| ||||| Sbjct 7686 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 7627 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| || || ||||||||||||||| | ||| | || ||||| ||| Sbjct 7626 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 7567 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || | || |||||||| || ||||| Sbjct 7566 ATCCAGAAGGAATCCACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 7520 >seq1833 Length=187927 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || |||| || |||||||||||| ||||| ||| Sbjct 43480 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATTACCCTGGAAGTGGAGAGTTCT 43421 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || || ||| ||||||||||| ||||| ||||| Sbjct 43420 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 43361 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||| | |||| || || ||||||||||||||| | ||| | || ||||| ||| Sbjct 43360 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 43301 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || | || ||||||| || ||||| Sbjct 43300 ATCCAGAAGGAATCCACTCTTCACCTTGTCCTGCGTCTTCGTGGTGG 43254 >seq8977 Length=60439 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||||||||| | || ||||||||||| | |||| ||| || ||| Sbjct 30047 AAAATTCAGGACAAAGAAGGAATCCCACCAGATCAACAAAGATTGATTTTTGCAGGAAAA 29988 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || | |||||| | |||| |||||||||||||||| ||||| || ||||| || ||| Sbjct 29987 CAGCTTGAAGATGGAAGAACTCTGGCCGATTATAATATCCAAAAGGAGTCTACCCTCCAT 29928 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 || || | || || || ||||| Sbjct 29927 TTGGTTCTCCGCCTTCGTGGTGG 29905 >seq14711 Length=21231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || || || |||||| |||| || Sbjct 4841 ATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACAATTACCTTGGAGGTTGAGAGTTCA 4900 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| ||||||||||| |||| || ||| Sbjct 4901 GATACCATTGATAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCAGACCAA 4960 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || ||||| | |||||| | |||| | |||||||||||| Sbjct 4961 CAAAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGAAGAACTCTTGCCGATTATAAT 5020 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||| || ||||| || | || || || || || Sbjct 5021 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGTGGAGG 5067 >seq7474 Length=135391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | ||||| || || |||||| |||| || Sbjct 126678 ATGCAAATCTTTGTCAAGACTCTCACCGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 126737 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 ||| | ||| | || ||| |||||| ||||||||||| || | || || || Sbjct 126738 GATACCATTGATAATGTGAAAGCCAAAATTCAGGACAAAGAAGG-AATCTCATCAGACCA 126796 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | |||| ||| || ||||| | |||||| | |||| | ||||||||||| Sbjct 126797 ACAAAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGAAGAACTCTTGCCGATTATAA 126856 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||| || ||||| || | || || || ||||| Sbjct 126857 CATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGTGGTGG 126904 >seq3967 Length=121343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || |||| || ||||||||||| |||| ||| Sbjct 66461 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 66520 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || || ||| ||||| ||||| ||||| ||||| Sbjct 66521 GATACGATAGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCCCCAGATCAG 66580 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| || || ||||||||||||||| | ||| |||| ||||| ||| Sbjct 66581 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 66640 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || | || |||||||| || || || Sbjct 66641 ATCCAGAAGGAATCTACTCTTCACCTTGTCTTGCGTCTTCGTGGCGG 66687 >seq433 Length=331005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| ||||| ||||| || ||| | |||| || || |||||||||||| Sbjct 36914 GACAAAGAAGGGATTCCCCCAGATCAGCAGAGGTTGATTTTCGCTGGGAAACAATTGGAA 36973 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | ||| | || ||||| ||||| || || ||||| || || || | || ||| Sbjct 36974 GATGGAAGGACTCTTGCTGATTACAATATCCAGAAGGAATCCACTCTTCACCTTGTCTTG 37033 Query 111400 CGTCTGCGCGGTGG 111413 ||||| || ||||| Sbjct 37034 CGTCTTCGTGGTGG 37047 >seq3224 Length=148195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | || ||||| || || ||| | || ||| | | Sbjct 66827 ATGCAGATCTTTGTGAAAACCCTTACAGGCAAGACAATCACCCTTGAGGTGGAGAGCTCC 66886 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || ||| || ||| ||||| || ||| | || | || || Sbjct 66887 GACACTATTGATAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATACCACTGGACCAG 66946 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| || ||||| | |||||| | || | || ||||| ||| Sbjct 66947 CAGAGGTTAATTTTTGCTGGGAAACAGCTTGAAGATGGCAGGACCCTAGCAGATTACAAT 67006 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || ||||| || || || ||||||||||| || ||||||| Sbjct 67007 ATTCAGAAGGAGTCTACTCTCCACTTGGTGTTGCGTCTCCGAGGTGGCA 67055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422640487369600