Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12846 143 5e-29 seq1552 127 4e-24 seq6975 118 2e-21 seq380 118 2e-21 seq10326 95.1 2e-14 seq14151 93.3 9e-14 seq10437 93.3 9e-14 seq7663 93.3 9e-14 seq5044 93.3 9e-14 seq660 93.3 9e-14 seq77 93.3 9e-14 seq12404 91.5 3e-13 seq9474 91.5 3e-13 seq4583 91.5 3e-13 seq20314 87.8 4e-12 seq6333 87.8 4e-12 seq5880 87.8 4e-12 seq3273 87.8 4e-12 seq1950 87.8 4e-12 seq8523 84.2 4e-11 seq1785 84.2 4e-11 seq1476 84.2 4e-11 >seq12846 Length=30717 Score = 143 bits (158), Expect = 5e-29 Identities = 207/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||||| ||||||| || ||||| || || | |||| | | | || ||||| Sbjct 6303 TGACTTCATTAACAAGGAACTTATTCTGTTTTCCATGGCTGATCTTCAAAGATCAATTCC 6362 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 ||||| |||||||| ||||| ||| | ||||||||||| ||| || ||| | Sbjct 6363 TTCTGTGGTCGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTCTTCTGCGCCTTTAAGAG 6422 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || | || |||| || || |||| ||||| |||||||| || || ||||| Sbjct 6423 AAATTTTGTAAAAGAGGCGAAAGTTTCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGC 6482 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| ||||| |||||||| | || ||||| | || ||||| || || | ||| Sbjct 6483 TTACCATCATGGTGAACAGAGTCTTATGAGTACCATTATTGGAATGGCTCAAGATTTTGT 6542 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||||||||| || ||| | || | || || ||||| ||||| ||||| Sbjct 6543 TGGCAGTAACAATATAAACGTTCTTCGTCCGAATGGTCAATTTGGAACTCGT 6594 >seq1552 Length=328184 Score = 127 bits (140), Expect = 4e-24 Identities = 204/292 (70%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||||| | ||||| || ||||| || || |||| | | | || ||||| Sbjct 289235 TGACTTCATTAATAAGGAACTTATTCTGTTTTCCATAGCTGATCTTCAAAGGTCGATTCC 289176 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | |||| |||||||| ||||| ||| | || ||||| || || || ||| | Sbjct 289175 TTCCATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAAATCCTTTTCAGTGCCTT-AAGAG 289117 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || | || |||| ||||| |||| | ||| |||||||| |||| ||||| Sbjct 289116 AAATTTTGTAAAAGAGGCAAAGGTTTCTCAATCTTCAGGTTATGTTTCCGTGCATTCTGC 289057 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 ||||||| |||||||||||||| | || ||||| | || ||||| || || | ||| Sbjct 289056 TGACCATCATGGTGAGCAGAGTCTTATGAGTACCATTATTGGAATGGCTCAAGATTTTGT 288997 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||||||||||| || | || || || || ||||| |||||| ||||| Sbjct 288996 GGGTAGTAACAACATCAATCTTCTTCTTCCGAATGGTCAATTTGGTACTCGT 288945 >seq6975 Length=77254 Score = 118 bits (130), Expect = 2e-21 Identities = 202/292 (69%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || | ||||| || ||| | || ||| |||| | | | || ||||| Sbjct 38126 TGACTTTATTAATAAGGAACTTATTTTGTTTTCGATAGCTGATCTTCAAAGGTCGATTCC 38185 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | |||| |||||||| ||||| ||| | || ||||| || || || ||| | Sbjct 38186 TTCCATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAAATCCTTTTCTGTGCCTTTAAGAG 38245 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || | || |||| ||||| |||| ||||| |||||||| ||||| ||||| Sbjct 38246 AAATTTTGTAAAAGAGGCAAAGGTTTCTCAATTTTCAGGTTATGT-TCCGAGCATTCTGC 38304 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| || | ||||||||| | || ||||| | || ||||| || || | ||| Sbjct 38305 TTACCATCATGGGGGGCAGAGTCTAATGAGTACCATTATTGGAATGGCTCAAGATTTTGT 38364 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||||||||||| ||| | || | || || || || ||||| ||||| Sbjct 38365 GGGTAGTAACAACATCAACCTTCTTCGTCCAAATGGCCAATTTGGCACTCGT 38416 >seq380 Length=348000 Score = 118 bits (130), Expect = 2e-21 Identities = 202/292 (69%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || | ||||| || ||| | || ||| |||| | | | || ||||| Sbjct 2183 TGACTTTATTAATAAGGAACTTATTTTGTTTTCGATAGCTGATCTTCAAAGGTCGATTCC 2242 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | |||| |||||||| ||||| ||| | || ||||| || || || ||| | Sbjct 2243 TTCCATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAAATCCTTTTCTGTGCCTTTAAGAG 2302 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || | || |||| ||||| |||| ||||| ||| |||| ||||| ||||| Sbjct 2303 AAATTTTGTAAAAGAGGCAAAGGTTTCTCAATTTTCAGGT-ATGTTTCCGAGCATTCTGC 2361 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| || || |||||||| | || ||||| | || ||||| || || | ||| Sbjct 2362 TTATCATCATGGCGAACAGAGTCTTATGAGTACCATTATTGGAATGGCTCAAGATTTTGT 2421 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||||||||||| ||| | || | || || ||||| |||||| ||||| Sbjct 2422 GGGTAGTAACAACATCAACCTTCTTCGTCCAAATGGTCAATTTGGTACTCGT 2473 >seq10326 Length=46157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 38486 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 38427 Query 142562 GCCCCAC 142568 ||||||| Sbjct 38426 GCCCCAC 38420 >seq14151 Length=24121 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 13561 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13502 Query 142563 CCCCAC 142568 |||||| Sbjct 13501 CCCCAC 13496 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| ||| Sbjct 10832 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAG 10773 Query 142563 CCCCAC 142568 |||||| Sbjct 10772 CCCCAC 10767 >seq10437 Length=49765 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 16557 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16498 Query 142563 CCCCAC 142568 |||||| Sbjct 16497 CCCCAC 16492 >seq7663 Length=68338 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 57611 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57552 Query 142563 CCCCAC 142568 |||||| Sbjct 57551 CCCCAC 57546 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 65598 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 65539 Query 142563 CCCCAC 142568 |||||| Sbjct 65538 CCCCAC 65533 >seq5044 Length=101968 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 98395 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 98336 Query 142563 CCCCAC 142568 |||||| Sbjct 98335 CCCCAC 98330 >seq660 Length=283860 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 175386 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 175327 Query 142563 CCCCAC 142568 |||||| Sbjct 175326 CCCCAC 175321 >seq77 Length=519112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 167462 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 167403 Query 142563 CCCCAC 142568 |||||| Sbjct 167402 CCCCAC 167397 >seq12404 Length=33045 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 21267 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21326 Query 142564 CCCAC 142568 ||||| Sbjct 21327 CCCAC 21331 >seq9474 Length=57205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 ||| || ||||| ||||||||| |||||||||| || |||||||||| ||||||||||| Sbjct 41746 TGATATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAATCTCGTGGTCGTGGG 41687 Query 142557 TTCGAGCCCCACATCGGGCA 142576 ||||| |||||| ||||| Sbjct 41686 ATCGAGTCCCACAGTGGGCA 41667 >seq4583 Length=109855 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||| ||||||||| Sbjct 13372 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCG 13431 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 13432 AGCCCCAC 13439 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| | ||||||||||||||| Sbjct 20978 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCG 21037 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 21038 AGCCCCAC 21045 >seq20314 Length=5189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||| |||||||||||| || ||||||| || ||||||||||||||| Sbjct 1449 ATGGCCCGTCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1508 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 1509 AGCCCCAC 1516 >seq6333 Length=83377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 66456 AGCCCATCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 66515 Query 142563 CCCCAC 142568 |||||| Sbjct 66516 CCCCAC 66521 >seq5880 Length=130054 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 82585 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 82644 Query 142563 CCCCAC 142568 |||||| Sbjct 82645 CCCCAC 82650 >seq3273 Length=275534 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 199494 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 199553 Query 142563 CCCCAC 142568 |||||| Sbjct 199554 CCCCAC 199559 >seq1950 Length=183803 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 86564 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAG 86505 Query 142563 CCCCAC 142568 |||||| Sbjct 86504 CCCCAC 86499 >seq8523 Length=64728 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| | |||||||||||||| ||| || ||||||| || ||||||||||||||||| Sbjct 57081 AGCCCGTCTGGCTCAGTCGGTAGAACGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57022 Query 142563 CCCCAC 142568 |||||| Sbjct 57021 CCCCAC 57016 >seq1785 Length=189598 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||| ||| Sbjct 141582 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGATCG 141641 Query 142561 AGCCCCACATCGGGCA 142576 || |||||| ||||| Sbjct 141642 AGTCCCACAGTGGGCA 141657 >seq1476 Length=216945 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 ||||||||| |||||||||| || ||||||| || ||||||||||| ||||| ||||||| Sbjct 177594 TAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGATCGAGTCCCACAT 177653 Query 142571 CGGGCA 142576 ||||| Sbjct 177654 AGGGCA 177659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026816348207408