Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq9733 98.7 7e-16 seq11709 95.1 9e-15 seq819 95.1 9e-15 seq7474 91.5 1e-13 seq3224 89.7 4e-13 seq1278 89.7 4e-13 seq1833 87.8 1e-12 seq3967 86.0 4e-12 seq8995 84.2 2e-11 seq6053 82.4 5e-11 seq5974 82.4 5e-11 seq3059 82.4 5e-11 seq2478 82.4 5e-11 seq2335 82.4 5e-11 >seq9733 Length=51005 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || ||||||||||| |||| ||| | Sbjct 37197 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 37138 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || ||| || ||||| || | || | | || Sbjct 37137 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 37078 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 37077 CAGAGGTTGATTTTTGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 37018 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||||||| | || || ||| | || || || Sbjct 37017 ATTCAGAAGGAATCAACTCTTCATCTTGTCTTGCGTCTTCGTGGTGG 36971 >seq11709 Length=37133 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||||||| |||| ||| | | Sbjct 7746 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACCCTGGAGGTGGAGAGCTCT 7687 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || ||||| || ||| || ||||| || | || | | || Sbjct 7686 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 7627 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || || ||||| |||||| | |||||| || ||| | || ||||||||| Sbjct 7626 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 7567 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| |||||||| | || || ||| | || || || Sbjct 7566 ATCCAGAAGGAATCCACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 7520 >seq819 Length=264122 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || || ||||| |||||||| ||| | || ||| || || Sbjct 11932 ATGCAAATATTTGTGAAGACCTTGACGGG-AAAACCATCACCCTTGAGGTGGATACCTCA 11874 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || ||| ||| || |||||||| | ||| | || Sbjct 11873 GACACGATCGACAATGTGAAAGCAAAGATTCAGGACAAAGAGGGGATTCCTCCGGATCAG 11814 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || ||| |||| || || |||||||| ||| | ||||| |||||| Sbjct 11813 CAGAGGTTGATATTTTCTGGGAAGCAGTTAGAAGATGGTCGGACTTTAGCCGACTACAAT 11754 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || ||||||||||| ||||| ||| Sbjct 11753 ATCCAGAAGGAATCCACTCTGCAT 11730 >seq7474 Length=135391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || || ||||| || ||||| ||| | || Sbjct 126906 ATGCAGATCTTTGTGAAGACTCTTACTGGAAAGACCATCACTTTGGAAGTTGAAAGCTCA 126965 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| || ||||| |||||| | || | |||| Sbjct 126966 GACACAATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCAG 127025 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || ||||||||||| ||||| |||||| || || |||| || || ||| Sbjct 127026 CAAAGACTCATTTTTGCTGGCAAGCAACTTGAAGATGGAAGGACGTTGGCTGACTATAAT 127085 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || ||||| || |||||||| |||| || || Sbjct 127086 ATCCAAAAGGAGTCGACTCTTCACTTGGTGTTGCG 127120 >seq3224 Length=148195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| |||| | |||| ||||| | || |||||||| ||||| || ||| Sbjct 66920 GACAAGGAGGGCATACCACTGGACCAGCAGAGGTTAATTTTTGCTGGGAAACAGCTTGAA 66979 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | || | || |||||||||||||||||||| |||||||| || |||| || Sbjct 66980 GATGGCAGGACCCTAGCAGATTACAATATTCAGAAGGAGTCTACTCTCCACTTGGTGTTG 67039 Query 22047 CGTTTACGAGGAGG 22060 ||| | ||||| || Sbjct 67040 CGTCTCCGAGGTGG 67053 >seq1278 Length=225562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| || || || ||||||||||| |||| ||| | Sbjct 157848 ATGCAGATCTTCGTCAAAACTTTGACCGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 157907 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || ||| || ||||| || | || | |||| Sbjct 157908 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGACCAG 157967 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || || ||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 157968 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 158027 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| |||||||| | || || ||| | || || || Sbjct 158028 ATACAAAAGGAATCCACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 158074 >seq1833 Length=187927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||||||| ||||| ||| | Sbjct 43480 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATTACCCTGGAAGTGGAGAGTTCT 43421 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || ||||| || ||| || ||||| || | || | | || Sbjct 43420 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 43361 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || || ||||| |||||| | |||||| || ||| | || ||||||||| Sbjct 43360 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 43301 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| |||||||| Sbjct 43300 ATCCAGAAGGAATCCACTCTTCA 43278 >seq3967 Length=121343 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| | || || ||||| |||||| | |||||| || ||| |||| |||||| Sbjct 66578 CAGCAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTAC 66637 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||||||||||||||| | || || ||| | || || || Sbjct 66638 AATATCCAGAAGGAATCTACTCTTCACCTTGTCTTGCGTCTTCGTGGCGG 66687 >seq8995 Length=56531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 21825 TAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACG 21884 |||| || ||||| || ||| | || || | || || ||||| || ||| | || | Sbjct 47175 TAGTCGAATATGCAGATCTTTGTGAAGACCCTCACCGGAAAAACAATCACCCTCGAGGTG 47234 Query 21885 GAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCT 21944 ||| | |||| || | | || ||||| || ||| |||||||| || | ||| Sbjct 47235 GAAAGCTCAGACACCATCGATAATGTTAAGGCCAAGATTCAAGATAAAGAAGGCATCCCT 47294 Query 21945 GTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCC 22004 |||| ||| || | ||||| || || ||||| || || ||| || |||| Sbjct 47295 CCGGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTTGAGGATGGTCGCACATTGGCG 47354 Query 22005 GATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||||||||| ||||| ||| |||| | ||| |||| || || Sbjct 47355 GATTACAACATCCAGAAGGAATCGACTCTCCATCTGGTCCTCCGTCTACGCGGTGG 47410 >seq6053 Length=86585 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| || || || ||||| |||||| | || ||| | | Sbjct 18678 ATGCAGATCTTTGTTAAAACCTTGACCGGAAAAACAATTACCCTTGAGGTAGAAAGCTCC 18737 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||||| ||||| || || | ||| | ||||| Sbjct 18738 GATACGATCGACAATGTGAAGGCGAAAATCCAGGATAAGGAAGGGATTCCTCCAGACCAA 18797 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || || || || || || || |||||| | || | || ||||||||| Sbjct 18798 CAGAGGTTGATTTTCGCAGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAAT 18857 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| ||||| Sbjct 18858 ATACAGAAAGAGTCTACGCTTCA 18880 >seq5974 Length=88138 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||||||| | || || || ||||| ||| | || |||| | Sbjct 73096 ATGCAAATTTTCGTTAAAACACTCACTGGTAAGACCATCACCCTCGAGGTGGAAAGTTCT 73037 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | || | ||||| Sbjct 73036 GATACCATCGACAATGTAAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 72977 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| || || ||| ||| | ||||| || || Sbjct 72976 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGTACTCTTGCCGACTATAAC 72917 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| || || || |||| | ||||| |||| ||| Sbjct 72916 ATCCAGAAGGAATCCACACTCCACTTGGTCCTTCGTTTGAGAGGTGGA 72869 >seq3059 Length=143113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| || ||||| ||||| |||||| | || ||| | | Sbjct 1976 ATGCAGATATTTGTCAAAACCTTGACGGGAAAAACAATTACCCTCGAGGTGGAGAGCTCG 1917 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | | ||| |||||| |||||||| || | ||| | ||| Sbjct 1916 GATACGATCGACAACGTGAAGGCTAAAATTCAGGATAAAGAAGGGATCCCTCCGGATCAA 1857 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || ||||| || || || || | || | || ||||||||| Sbjct 1856 CAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTGCAGATTACAAT 1797 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || |||||||| || Sbjct 1796 ATCCAGAAAGAGTCTACTCTCCA 1774 >seq2478 Length=159706 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || || ||||| ||| ||||| || | || Sbjct 145731 ATGCAGATTTTTGTGAAAACCCTGACCGGAAAGACCATAACCCTGGAAGTCGAGAGCTCA 145672 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA-ACCA 21952 || || | | || ||||| || || | ||||| ||||| | |||| | || | Sbjct 145671 GACACAATTGATAATGTTAAGGCTAAGATC-CAGATAAGGAGGGAAT-CCTGCCAGACTA 145614 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | ||||||||||| |||||||| |||||| | ||| | || | ||||| Sbjct 145613 ACAGAGGTTGATCTTTGCTGGGAAACAACTTGAAGATGGGAGGACTCTTGCAAACTACAA 145554 Query 22013 TATTCAGAAGGAATCTACT 22031 ||| ||||||||||| ||| Sbjct 145553 TATCCAGAAGGAATCAACT 145535 >seq2335 Length=171082 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||| ||||| ||||| ||| | | Sbjct 23448 ATGCAGATTTTTGTAAAGACTTTGACTGGGAAAACGATTACTTTGGAAGTTGAAAGCTCG 23507 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || ||||| || ||| || || || || | || | || Sbjct 23508 GATACGATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAG 23567 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| |||||| | |||||| | ||| |||| ||||| ||| Sbjct 23568 CAGAGGCTCATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTTTGGCTGATTATAAT 23627 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| || || || ||||| Sbjct 23628 ATTCAGAAAGAGTCCACCCTTCA 23650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357786592310752