Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9751 152 1e-31 seq12078 136 7e-27 seq10024 118 2e-21 >seq9751 Length=50749 Score = 152 bits (168), Expect = 1e-31 Identities = 410/622 (66%), Gaps = 10/622 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| ||||| || ||| ||| ||||| ||| |||| ||| Sbjct 48891 CTTGCCTTTTTCGCCGCCTCCGACGGAATCGTCCTTGAAAACCTCGCCGTTCGGTTTATG 48950 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 |||||||| || || |||||||| |||||||| ||||| || || || ||||| Sbjct 48951 AAAGAGGTCCAAATCTCCGAGGCGCGGGCTTTCTACGGTTTCCAAATCGCTATTGAGAAT 49010 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| ||||| || | | || |||||| ||| ||| || Sbjct 49011 ATACACTCTGAGATGTACAGTCTCCTTTTGGAGACCTACATCAAGGACTCCGATGAAAAG 49070 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | | || ||| ||||| || ||| |||| || | || ||||| || ||||| Sbjct 49071 AGCCGACTCTTCCGCGCCATTGAAACGGTGCCGTGTGTGGCTAAAAAGGCCGAGTGGGCC 49130 Query 42663 CTCAACTGGATCGA--GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| | ||| || | ||| |||| |||| || || | |||||| | Sbjct 49131 ATGAAATGGATCAACGGAG----GA-GAAACTTTCGCCGAGCGGTTGATCGCCTTTGCTT 49185 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||| ||||| ||||| || ||| | |||| |||||| | || || | Sbjct 49186 GCGTCGAGGGGATCTTTTTCTCCGGAAGTTTCTGCGCCATATTCTGGTTGAAAAAGCGCG 49245 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||||||| | || ||||| ||||| | || | |||||||| || || Sbjct 49246 GTTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATATCGCGAGACGAGGGTCTCCACT 49305 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | || || || ||| | ||| ||| | | ||| || |||| | | ||||| | Sbjct 49306 GTGATTTCGCTTGCTTGTTGT--ACGATCTA-CTCCGGTCTAAGCTCAGTGAAGAGCGCG 49362 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | || || | ||||||||| | || |||| ||||||| | | | |||| Sbjct 49363 TGAAAGGGATAATAAAAGAGGCCGTGTATATAGAGAGGGAGTTCGTGTGCGACGCTCTGC 49422 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | |||||||| ||| ||| || | Sbjct 49423 CCTGCGCATTGGTTGGTATGAACGGCGATTTAATGAGTCAGTACATCGAGTTCGTAGCGG 49482 Query 43021 ACCATCTCCTGTGCCAGATGGG 43042 | | || ||| || | |||| Sbjct 49483 ATCGGCTGCTGGGCGCGTTGGG 49504 >seq12078 Length=35335 Score = 136 bits (150), Expect = 7e-27 Identities = 296/440 (67%), Gaps = 5/440 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || || |||||||| || || ||| ||| || || ||| | |||||||| Sbjct 4184 CTCGCCTTTTTTGCAGCCTCTGATGGTATTGTCCTTGAAAATCTTGCCGTCCGGTTCATG 4243 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || || |||||||| ||| |||||||| |||||||| ||||| || || Sbjct 4244 AAAGAGGTCCAAATCTCCGAGGCGCG-TGCTTTCTACGGTTTCCAGATCGCCATTGAAAA 4302 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || |||||| ||| ||| || Sbjct 4303 TATCCACTCCGAGATGTACAGTCTGCTCCTCGAGACTTACATCAAAGATTCCGAGGAAAA 4362 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | | || ||| ||| | || ||| | || ||| | || ||||| || ||||| Sbjct 4363 GAGTCGCCTCTTCCGTGCCGTTGAAACGGTACCGTGCGTGGCTAAAAAGGCCGAGTGGGC 4422 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||| | | || | ||| |||| |||| || || |||| ||| | Sbjct 4423 TATGAAATGGATCAACGG---CGGAGAAACTTTCGCCGAGCGGTTGATAGCTTTTGCTTG 4479 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 | | ||||| ||||| ||||| || ||| | |||| || ||| | || || | Sbjct 4480 CATTGAGGGGATCTTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGTTGAAAAAGCGCGG 4539 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || |||||| ||| | || ||||| ||||| | ||| | || || || || || | Sbjct 4540 GTTGATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCGCGAGATGAAGGCCTCCACTG 4599 Query 42842 GGACTTTGCCTGCCTCCTGT 42861 || ||||| ||| | |||| Sbjct 4600 CGATTTTGCTTGCTTGCTGT 4619 >seq10024 Length=53621 Score = 118 bits (130), Expect = 2e-21 Identities = 301/455 (66%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||| | || | || ||||| || || ||||| || || || ||| ||| || || Sbjct 14555 TTCATCACACACGTTCTCGCCTTTTTTGCTGCCTCCGATGGTATCGTCCTTGAAAATCTT 14614 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 ||| | |||||||||||||||| || || |||||||| ||| ||||| || ||||| Sbjct 14615 GCCGTCCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCG-TGCTTTCTATGGTTTCCA 14673 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| ||||| || || | ||||| ||| ||||| || ||| | || |||||| Sbjct 14674 GATCGCCATTGAAAATATCCACTCCGAGATGTACAGTCTGCTTCTCGAGACTTACATCAA 14733 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | | || | | | || ||| ||||| || ||| |||| ||| | || Sbjct 14734 AGATTCGGAGGAAAAGAGCCGCCTCTTCCGTGCCATTGAAACGGTGCCGTGCGTGGCTAA 14793 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 || || || ||||| | || |||||| | | || | ||| |||| |||| || | Sbjct 14794 AAAAGCCGAGTGGGCTATGAAATGGATCAACGG---CGGAGAAACTTTCGCCGAGCGGTT 14850 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | | || ||| | | | ||||| || || ||||| || ||| | |||| || || Sbjct 14851 GATCGCTTTTGCTTGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTGCGCCATATTTTG 14910 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 | | || || | || ||||| ||| | || ||||| || || | ||| | || Sbjct 14911 GTTGAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCCAATGAGTTAATCTCGCGAGA 14970 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 || || || || | || ||||| ||| | |||| Sbjct 14971 TGAAGGCCTCCACTGCGATTTTGCTTGCTTGCTGT 15005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943424513050880