Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10551 87.8 1e-12 seq1833 86.0 5e-12 >seq10551 Length=45279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| || ||| ||||||||| ||||||||||| || || ||| Sbjct 35714 AGGCGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAAAGTTCGA 35655 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| ||||| || ||||| |||| | |||||||||| || | | ||| Sbjct 35654 CCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCC 35595 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| | | | ||||||| ||||| | ||| | | || || ||| ||| Sbjct 35594 TTGTCC-TGAATCTTTGCTT--------TCACATTGTCAATCGTGTCTGAGCTTTCAACC 35544 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||||||| || || || || || ||||| || ||||| Sbjct 35543 TCAAGGGTGATTGTTTTACCAGTCAGGGTCTTGACAAATATCTGCAT 35497 >seq1833 Length=187927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || ||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 43491 AGCCTCAAAACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGG 43550 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||| |||||||| || || | |||||||||| || | || ||| Sbjct 43551 CCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGGATGCCCTCC 43610 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 ||||| || || ||| | | | | || | || | ||| ||| | || Sbjct 43611 TTGTCTTGGATCTTGGCCTTCACGTTGTCGATCGTGTC-GGAGCTCTCGACTTCCAAGGT 43669 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| ||||| ||||| || ||||| || ||||||||||| Sbjct 43670 TATGGTTTTACCGGTCAGGGTTTTGACGAAGATTTGCAT 43708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396687420225376