Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9751 113 1e-19 seq12078 89.7 1e-12 seq10024 84.2 5e-11 >seq9751 Length=50749 Score = 113 bits (124), Expect = 1e-19 Identities = 567/882 (64%), Gaps = 41/882 (5%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||||||||| || || | | ||||| ||||| ||||| || | || | |||||| Sbjct 48747 TTCCCCATCCAATACCCACAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGG 48806 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTC-GTCGACTGGCGCGAGAAACTCAATGA 242993 ||| ||||||| || |||| | || || ||| ||||| || | ||||| | Sbjct 48807 ACCGCCGAGGAGGTCGATCTGTCATCCGATCTCCGTC-ACTGG---GAAACACTCACCGC 48862 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 ||| || || || ||||||| || |||| | |||||||| | |||||| || || || Sbjct 48863 CGATGAGCGCCACTTCATCACTCATGTTCTTGCCTTTTTCGCCGCCTCCGACGGAATCGT 48922 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | ||||| || || | | |||| || || | | ||||| ||| | Sbjct 48923 CCTTGAAAACCTCGCCGTTCGG-TTTATGAAAGAGGTCCAAATCTCCGAGGCGCGGGCTT 48981 Query 243113 TTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTT 243168 | || | || ||||| ||| | |||| || || ||||| || ||| ||| Sbjct 48982 TCTACGGTTTCCAAATCGCTATTGA--GAATATA--CACTCTGAGATGTACAGTCTCCTT 49037 Query 243169 ATCGACGCGCTTATT------TCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATC 243222 | || | || || |||||| |||||| ||| || ||| |||||| Sbjct 49038 TTGGAGACCTACATCAAGGACTCCGATGAA-AAGAGC----CGA-CTCTTCCGCGCCATT 49091 Query 243223 GAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGT 243282 |||| | ||| || ||| ||||| | ||||| ||| ||| | | || Sbjct 49092 GAAACGGTGCCGTGTGTGGCTAAAAAGGCCGAGTGGGCCATGAAATGGATCAACGGAGGA 49151 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 || | || || ||||| | |||||| | ||||| || || || | || ||||| Sbjct 49152 GAAACTTTCGCCGAGCGGTTGATCGCCTTTGCTTGCGTCGAGGGGATCTTTTTCTCCGGA 49211 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 |||||||||||||| || ||| || || ||| | ||||| || | | | || Sbjct 49212 AGTTTCTGCGCCATATTCTGGTTGAAAAAGCGCGGTTTAATGCCCGGATTAACTTTCTCA 49271 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTAT-GTAT-- 243459 |||||||| || || |||||||| || ||| | |||| | |||| | ||| Sbjct 49272 AACGAGTTAATATCGCGAGACGAGGGTCTCCACTGTGATTTCGCTT-GCTTGTTGTACGA 49330 Query 243460 TCAAAGCTCCAGAACAAGCTACCATTCGAAA-CG-GTCAAACAAATCATCACAGAAGCAG 243517 || | |||| | ||||| || | | | || || ||| || || | ||| || | Sbjct 49331 TCTA--CTCCGGTCTAAGCT--CAGTGAAGAGCGCGTGAAAGGGATAATAAAAGAGGCCG 49386 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | | | || | ||| ||| | ||||||||| | || ||| | |||| |||||| Sbjct 49387 TGTATATAGAGAGGGAGTTCGTGTGCGACGCTCTGCCCTGCGCATTGGTTGGTATGAACG 49446 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 || | ||| | ||||||||||| |||||||| || || | | |||| | || | Sbjct 49447 GCGATTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGCTGCTGGGCGCGTTGGGGT 49506 Query 243638 ATGAGAAAGTGTACAA--CTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCA 243695 | | ||| ||||||| | || || || |||| | ||||| || |||||| | || Sbjct 49507 ACGGGAAGATGTACAATGTTGCA--AATCCATTTGATTGGATGGAACTGATTTCGTTGCA 49564 Query 243696 AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| |||||||| ||| | || |||| ||||| Sbjct 49565 GGGGAAAACTAATTTCTTCGAGAAGAGAGTGGGTGAGTATCA 49606 >seq12078 Length=35335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || ||||| || || | | ||||| ||||| ||||| || | || |||||||| Sbjct 4040 TTTCCGATCCAATACCCACAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCCTTTTGG 4099 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTC-GTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||||||| | || | || || ||| ||||| || | |||| | Sbjct 4100 ACTGCCGAGGAAGTTGATTTGTCTTCCGATCTCCGTC-ACTGG---GAAACTCTCACCGC 4155 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 |||||| || || ||||||| ||| |||| | ||||| |||| ||| ||||||||||| Sbjct 4156 CGACGAGCGCCACTTCATCACTCACGTTCTCGCCTTTTTTGCAGCCTCTGATGGTATTGT 4215 Query 243054 GATGGAAAATCT 243065 | |||||||| Sbjct 4216 CCTTGAAAATCT 4227 >seq10024 Length=53621 Score = 84.2 bits (92), Expect = 5e-11 Identities = 162/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 242828 CACAAGAACCTATTTTGTCCGACAACGGATCTCGCAAGTTCTCTGCATTCCCCATCCAGT 242887 || |||| || || ||| |||| ||| | ||| ||||| | || || ||||| | Sbjct 14382 CAGAAGAGCCAATATTGGCCGAGAACCCAGATCG---GTTCTGTATGTTTCCGATCCAAT 14438 Query 242888 ATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAG 242947 | || | | ||||| ||||| ||||| || | || | |||||||| ||||||||| Sbjct 14439 ACCCACAGGTTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACTGCCGAGGAAG 14498 Query 242948 TTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATT 243007 | | || | || || ||||| || | |||| | |||||| || || | Sbjct 14499 TCGATTTGTCTTCCGATCTCCCACACTGG---GAAACGCTCACCGCCGACGAGCGCCACT 14555 Query 243008 TCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT 243065 |||||| |||| |||| | ||||| || | |||||||||||| || | |||||||| Sbjct 14556 TCATCACACACGTTCTCGCCTTTTTTGCTGCCTCCGATGGTATCGTCCTTGAAAATCT 14613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101785044192800