Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4303 150 2e-31 seq17672 145 9e-30 seq461 129 7e-25 seq2164 122 1e-22 seq11637 107 2e-18 seq86 104 3e-17 seq1980 87.8 2e-12 seq10024 84.2 3e-11 seq7492 82.4 9e-11 seq6183 82.4 9e-11 >seq4303 Length=114645 Score = 150 bits (166), Expect = 2e-31 Identities = 258/368 (70%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | || || |||||| || || | | || ||||| || Sbjct 59694 ATCAAACCGTCCTGGCCTCAATAGGGCAGAATCAAGAATGTCGGCCCTGTTGGTTGCTGC 59753 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | |||||||| |||| || ||||||||||| || |||||||||||||| Sbjct 59754 AATCACGATGATACCTGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 59810 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | |||||| |||| ||||||||| || | ||||| | | ||| ||| || Sbjct 59811 GAGAGTTTGCTCCCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 59870 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 |||||||| ||||| | |||||||||||||| ||| | | | | ||| ||| | Sbjct 59871 AGCATCAATTTCATCCACAAAGACGATGCATGGGGCATTCTCCTTGGCCTTCTTGAAA-A 59929 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || ||| || |||||||||||||| || ||||| | | | ||| Sbjct 59930 GATCACGAACTCGAGAGGCACCGACACCAACAAACATTTCAACAAACTCGGAACCTGAA- 59988 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || ||||||||| ||||| || Sbjct 59989 ATAGAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTGGCGAGAAGGGTCTTTCCA 60048 Query 16242 GTACCTGG 16249 || || || Sbjct 60049 GTTCCAGG 60056 >seq17672 Length=10974 Score = 145 bits (160), Expect = 9e-30 Identities = 240/339 (71%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| || ||| | | || |||||||| || || | |||||| || |||| || Sbjct 5812 ATCAAGAATGTCAGCCCTGTTAGTTGCGGCAATTACGATAATACCCGT---GTTACCCTC 5756 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || ||||||||||| |||| |||||| |||| ||||||||| || Sbjct 5755 AAAACCATCCATTTCAGTCAAAAGCTGATTAAGAGTTTGCTCCCTCTCATCATTCCCTCC 5696 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||||| | | ||| ||| || |||||||| ||||| | ||||| || || Sbjct 5695 ACCAATACCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCCACAAAGACAATACA 5636 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||| || | | | |||| ||| ||||| || || || ||| || |||||| Sbjct 5635 TGGGGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGAGAGGCACCGACACCA 5578 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 |||||||| || || || | | | ||| || | || ||| || || || |||||| Sbjct 5577 ACAAACATTTCAACGAACTCAGAACCTGAA-ATGGAGAAGAATGGCACGCCAGCTTCACC 5519 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| ||||||||||| || || || || Sbjct 5518 GGCAATTGCCTTGGCAAGAAGAGTCTTTCCAGTTCCAGG 5480 >seq461 Length=318114 Score = 129 bits (142), Expect = 7e-25 Identities = 238/341 (70%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| || ||| | | || ||||| || | || | |||||| || |||| || Sbjct 36314 ATCAAGAATGTCAGCCCTGTTAGTTGCAGCAACTACGATAATACCCGT---GTTACCCTC 36258 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||| |||||| |||| ||||||||| || Sbjct 36257 AAAGCCATCCATTTCAGTCAAAAGCTGATTAAGAGTTTGCTCCCTCTCATCATTCCCT-- 36200 Query 16034 CATACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 ||| ||||| | | ||| ||| || |||||||| ||||| | || || || Sbjct 36199 -CCACCGATACCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCCACAAATACAAT 36141 Query 16091 GCATGGTTGATTTT-CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||||| ||||| | | | ||| ||| ||||| || || || ||| || |||| Sbjct 36140 ACATGGGGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGAGAGGCACCGACAC 36082 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 |||||||||| || ||||| | | | ||| || | || ||| || ||| || |||| Sbjct 36081 CAACAAACATTTCAACAAACTCGGAACCTGAA-ATGGAGAAGAATGGCACACCAGCTTCA 36023 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||||| || ||| ||||| ||||| || || || || Sbjct 36022 CCAGCAATTGCCTTGGCAAGAAGGGTCTTTCCAGTTCCAGG 35982 >seq2164 Length=171303 Score = 122 bits (134), Expect = 1e-22 Identities = 235/339 (69%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| || || | | || ||||| || || || | |||||||| |||| || Sbjct 3487 ATCAAGAATGTCGGCCCTGTTGGTTGCTGCAATTACGATGATACCTGT---GTTACCCTC 3431 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||| || |||||||||| || | |||||| |||| ||||||||| || Sbjct 3430 GAAACCATCCATTTCAGTCAAAAGCTATTTGAGAGTTTGCTCCCTCTCATCATTCCCTCC 3371 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||||| | | |||| ||| || |||||||| ||||| | ||||| ||||| Sbjct 3370 ACCAATACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATGCA 3311 Query 16094 TGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCG-TACACGCTTGGCGCCCACACCA 16151 ||| ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 3310 TGGGGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAAACTCGAGAGGCACCGACACCA 3252 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 |||||||| || ||||| | | | ||| || | || ||| || || || |||||| Sbjct 3251 ACAAACATTTCAACAAACTCGGAACCTGAA-ATGGAGAAGAATGGCACTCCAGCTTCACC 3193 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| ||||| ||||| || || || || Sbjct 3192 AGCAATTGCCTTGGCAAGAAGGGTCTTTCCAGTTCCAGG 3154 >seq11637 Length=37454 Score = 107 bits (118), Expect = 2e-18 Identities = 313/471 (66%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| || || ||| ||||| ||||| || | ||||| || || || | | ||| Sbjct 35473 ATCCAGAATTTCAGGCCGATTAGTTGCAGCAAGGACAATAACGCCGGTATTAGCAGTAAA 35532 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| | |||||| | |||||| || | ||||||||| || Sbjct 35533 ACCATCCATTTCAGTCAACAACTGGTTCAAAGTTTGCTCTCTTTCATCATTTCCT---CC 35589 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| | | ||| | || || |||||||||||||| ||||| || | || Sbjct 35590 ACCAATCCCAGTCCCTCTTTGTCTCCCAACAGCATCAATCTCATCGATGAACACCAAACA 35649 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| || || || | || | || ||||||| || | | || || ||||| Sbjct 35650 TGG-CGA-GTTAGCCTTTGCCTTGTTGAACAGATCCCTAACTCTCGAAGCTCCAACACCC 35707 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||||||| | || | || | ||| | || ||| || || || |||||| Sbjct 35708 ACAAACATCTCGATGAACTCTGAACCAGAAAGTGAGAAGAAAGGAACCCCAGCTTCACCT 35767 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 |||||||| || || | ||||| || || || || || | || | ||| Sbjct 35768 GCAATGGCCTTAGCCAGCAATGTCTTGCCAGTCCCCGGAGGTCCAATTAAAAGCACTCCT 35827 Query 16272 CGTGGAATCTTGGC-GCCACTTC--CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||||| ||||| ||||| | |||| | | ||| |||| ||||| || ||||| Sbjct 35828 TTGGGAATTTTGGCACCCACTGCAGCAAA-TTTTTCTGGGGTT-TTTAAG-AACTCCACT 35884 Query 16329 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 | |||||| || || | ||||| | ||||| || |||||||| ||||| Sbjct 35885 ACCTCTTCAAAGTCTTGCTTGGCTTCATCAATGCCGGCAACATCGTTAAAC 35935 >seq86 Length=479666 Score = 104 bits (114), Expect = 3e-17 Identities = 180/258 (70%), Gaps = 13/258 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCA-- 15974 |||||| |||| | | || ||||| || || || | |||||||| |||| | Sbjct 283571 ATCAAGAATATTGGCCCTGTTGGTTGCTGCAATTACGATGATACCTGT---GTTACCCCC 283515 Query 15975 -AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||| || |||||||||||||| | |||||| |||| ||||||||| || Sbjct 283514 GAAACCATCCATTTCGGTCAAAAGCTGGTTGAGAGTTTGCTCCCTCTCATCATTCCCTCC 283455 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||||| | | ||| ||| || |||||||| ||||| ||||||||||| Sbjct 283454 ACCAATACCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCCGCAAAGACGATGCA 283395 Query 16094 TGG---TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || ||| || | ||| ||| ||||| || || || ||| || ||||| Sbjct 283394 GGGGCATTCTCTTTGGC---CTTCTTGAAA-AGATCACGGACTCGAGAGGCACCGACACC 283339 Query 16151 AACAAACATCTCCACAAA 16168 || |||||| || ||||| Sbjct 283338 AATAAACATTTCAACAAA 283321 >seq1980 Length=193800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| || || ||||| || | |||||||| | Sbjct 65759 AAACCCATCCATCTCAGTCAACAACTGATTGATTGTTTGCTCTCTCTCATCATTTCCACC 65818 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | || || |||||||||||||||||||| || ||||| Sbjct 65819 TCCAAGACCAGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATGAACACAATGCA 65878 Query 16094 TGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || ||| |||||| || || || | ||||| ||| | | || || || Sbjct 65879 AGGCGCCTTGGATTTCGC------CTTATCGAATAAATCCCTTACTCTCGATGCACCGAC 65932 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| ||||||| ||| ||||| | | || | ||| || || || || || ||| Sbjct 65933 ACCGACAAACAACTCGACAAACTCCGAAGCAGCGCATGAGAAAAACGGTACGCCAGCTTC 65992 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | || ||||| || ||||| || Sbjct 65993 TCCTGCTACAGCTCTCGCCAATAGTGTCTTTCCAGTACCAGG 66034 >seq10024 Length=53621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/208 (70%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GCGTTCCTTT-GCTGAGC 102183 || ||||| || ||||||||||| ||| | ||| | | | | |||| || |||| Sbjct 14792 AAAAAAGCCGAGTGGGCTATGAAATGGAT-----CAACGGCGGAGAAACTTTCGCCGAGC 14846 Query 102184 GACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTT 102243 | | |||| ||||| || ||||||| || || |||||||| |||||||| || | Sbjct 14847 GGTTGATCGCTTTTGCTTGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTGCGCCATAT 14906 Query 102244 ATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTC 102303 |||| | || ||||| || | ||||| || | |||||||| ||| | ||||| | Sbjct 14907 TTTGGTTGAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCCAATGAGTTAATCTCGC 14966 Query 102304 GTGACGAGGGACTCCACCAAGAGTTTGC 102331 | || || || |||||| || ||||| Sbjct 14967 GAGATGAAGGCCTCCACTGCGATTTTGC 14994 >seq7492 Length=70955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 188/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | || || || ||||| || | |||||||| | Sbjct 1746 AAACCCATCCATCTCAGTCAACAATTGATTGATTGTTTGCTCTCTCTCATCATTTCCACC 1687 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1686 TCCAAGACCAGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATGAACACAATGCA 1627 Query 16094 TGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || ||| ||||| || || || | ||||| ||| | | || || || Sbjct 1626 AGGCGCCTTGGACTTCGC------CTTATCGAATAAATCCCTTACCCTCGATGCACCAAC 1573 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 |||||| |||| ||| ||||| | || || | ||| || || || || | ||| Sbjct 1572 ACCAACGAACAACTCAACAAACTCTGAAGCAGCGCATGAGAAAAACGGTACCCCGGCTTC 1513 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | |||||||| || ||||| || Sbjct 1512 TCCTGCTACAGCTCTCGCCAATAGAGTCTTTCCAGTACCGGG 1471 >seq6183 Length=87118 Score = 82.4 bits (90), Expect = 9e-11 Identities = 188/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| || || ||||| || | |||||||| | Sbjct 46422 AAACCCATCCATCTCAGTCAACAACTGATTGATTGTTTGCTCTCTCTCATCATTTCCACC 46481 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | || || |||||||||||||||||||| || ||||| Sbjct 46482 TCCAAGACCAGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATGAATACAATGCA 46541 Query 16094 TGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || || |||||| || || || | ||||| ||| | || || || Sbjct 46542 AGGCGCCTTCGATTTCGC------CTTATCGAATAAATCCCTTACTCTGGAAGCACCTAC 46595 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || |||| ||||||||| | || || | ||| || || || || | ||| Sbjct 46596 ACCGACGAACAACTCCACAAACTCTGAAGCAGCGCATGAGAAAAACGGTACCCCGGCTTC 46655 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | |||||||| || ||||| || Sbjct 46656 TCCTGCTACTGCTCTCGCCAATAGAGTCTTTCCGGTACCAGG 46697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620141148911360