Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11637 89.7 6e-13 seq14120 82.4 9e-11 seq10024 82.4 9e-11 >seq11637 Length=37454 Score = 89.7 bits (98), Expect = 6e-13 Identities = 220/327 (67%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| ||||||||||||||||| || | ||| || ||| || ||||| | | Sbjct 35615 CCAACAGCATCAATCTCATCGATGAACACCAAACATGGCGAGTTAGCCTTTGCCTTGTTG 35674 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || | || | | ||||||||||| || |||||||| | ||| | || || Sbjct 35675 AACAGATCCCTAACTCTCGAAGCTCCAACACCCACAAACATCTCGATGAACTCTGAACCA 35734 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | ||| | ||| ||||| || ||||| || ||||| ||| || | ||||| Sbjct 35735 GAA-AGTGAGAAGAAAGGAACCCCAGCTTCACCTGCAATGGCCTTAGCCAGCAATGTCTT 35793 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA-CCACTTC--C 11912 || || || || | ||| | ||| | || ||| || |||||| ||||| | | Sbjct 35794 GCCAGTCCCCGGAGGTCCAATTAAAAGCACTCCTTTGGGAATTTTGGCACCCACTGCAGC 35853 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 ||| | || || | || | ||| ||||| | ||| |||| || | |||||| Sbjct 35854 AAATT---TTTCTGGGGTTTTTAAGAACTCCACTACCTCTTCAAAGTCTTGCTTGGCTTC 35910 Query 11973 GTCGATACCCTCAACATCGGTGAAACG 11999 || || || ||||||| || ||||| Sbjct 35911 ATCAATGCCGGCAACATC-GTTAAACG 35936 >seq14120 Length=29694 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 138246 TGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAATCCACCACCCTAGGTTCG 138305 |||||||| ||| |||||||||| | |||| ||||||||||||||| | ||| |||||| Sbjct 7437 TGGGGCTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTCG 7379 Query 138306 ACTCCTAGTGGGAGCTT 138322 ||||| |||||| ||| Sbjct 7378 ACTCCCGGTGGGACCTT 7362 >seq10024 Length=53621 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || |||||||| || ||||| | |||||| ||| | ||||||||| | || Sbjct 14982 TGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTTAATCCAGGCATTAACCCG 14923 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || | |||||| ||||| || ||||||||||| || || || ||||| | || Sbjct 14922 CGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAATATCCCCTCAATGCAA 14863 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG 119655 || ||||||| | ||||| || |||| Sbjct 14862 GCAAAAGCGATCAACCGCTCGGCGAAAG 14835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588405517846400