Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3550 179 4e-40 seq31365 174 2e-38 seq695 145 9e-30 seq3386 114 1e-20 >seq3550 Length=137586 Score = 179 bits (198), Expect = 4e-40 Identities = 230/316 (73%), Gaps = 1/316 (0%) Strand=Plus/Minus Query 169158 TCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAA 169217 |||||||||| |||||||| |||||||| || || || ||||| || || || |||| | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 169218 TCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCC 169277 |||| | |||||| ||||||||||| || | | | || |||||| |||| | | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 169278 CAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACG 169337 | || ||| || | ||||| || || | ||||| | || ||| | |||||| | || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 169338 GATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTG 169397 | || || |||||||||| || || ||| | | ||| | ||| ||| ||| || Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 92965 Query 169398 ACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACT 169457 | | ||||| || ||| ||||||||||||| |||||||| | ||| ||||| |||| Sbjct 92964 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 92905 Query 169458 TCCCACTAGACTTAGC 169473 |||| |||||| |||| Sbjct 92904 TCCCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 174 bits (192), Expect = 2e-38 Identities = 229/316 (72%), Gaps = 1/316 (0%) Strand=Plus/Minus Query 169158 TCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAA 169217 |||||||||| |||||||| |||||||| || || || ||||| || || | |||| | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 169218 TCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCC 169277 |||| | |||||| ||||||||||| || | | | || |||||| |||| | | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 169278 CAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACG 169337 | || ||| || | ||||| || || | ||||| | || ||| | |||||| | || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 169338 GATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTG 169397 | || || |||||||||| || || ||| | | ||| | ||| ||| ||| || Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 234 Query 169398 ACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACT 169457 | | ||||| || ||| ||||||||||||| |||||||| | ||| ||||| |||| Sbjct 233 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 174 Query 169458 TCCCACTAGACTTAGC 169473 |||| |||||| |||| Sbjct 173 TCCCTCTAGACCTAGC 158 >seq695 Length=285002 Score = 145 bits (160), Expect = 9e-30 Identities = 317/466 (68%), Gaps = 9/466 (2%) Strand=Plus/Minus Query 168524 CTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT 168583 |||||| | | ||||| | ||| ||||||||||| ||||| || ||| | | Sbjct 41111 CTTTATATCAGATGGTTTGTTGTTTTAATGATCCCTACCTTATTGACCGCAACTTTTTTA 41052 Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| | | ||||||||||| | | | ||||| || || || | |||||| | Sbjct 41051 TTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATT 40992 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 | || ||||| | || |||||||| || || || |||| || ||| |||| Sbjct 40991 TCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTA 40932 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 | || ||| | | ||| |||| || |||||||| || | | ||||| ||| |||| Sbjct 40931 GTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATAC 40873 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATG 168823 ||||| |||||||| |||| | | || |||||| || | || | || ||||| Sbjct 40872 AATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATA 40813 Query 168824 GGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTA 168882 ||| | ||| |||| ||| | || ||||||||| |||||||| | |||| || Sbjct 40812 GGTCGTGAGTTGGAACTTAGTTTCCA-TCTAGGTATGCACCCTTGGATTGCTATTGCATA 40754 Query 168883 TTCAGCACCAGTATCTGCAGC-ATT--TGCAGTATTCCTTGTATACCCATTTGGTCAGGG 168939 |||| | || ||| |||||| | | | | || ||| | | || ||| | ||||| || Sbjct 40753 TTCAACTCC--TAT-TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGG 40697 Query 168940 TTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAAC 168985 ||| ||||||||||||||| ||||||| |||| || |||||| Sbjct 40696 GAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 114 bits (126), Expect = 1e-20 Identities = 242/358 (68%), Gaps = 5/358 (1%) Strand=Plus/Minus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 ||||||||| | ||||||| |||||| |||||| | || || | || || | Sbjct 67788 CTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACT 67729 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCT-CTGATGGTATGCCTCTAGGAAT 168969 || ||| | | || ||| | | ||| || ||| | |||||||||||| ||| |||| Sbjct 67728 GTTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAAT 67669 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||| || ||||| |||||| | |||||||| || || | |||| ||||||| || Sbjct 67668 CTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAAC---ACATCTTTATGCACCC 67612 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| | | |||| || | |||| || |||||| | ||||||| Sbjct 67611 ATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGA 67552 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| | || || | | |||| | || | || Sbjct 67551 TTCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGG 67492 Query 169150 TTACAAGTTCGGTCAAGA-AGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||||| ||| ||||||| ||| |||| |||||||| | || || ||||| || || Sbjct 67491 TTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTT 67434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563894881866240