Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq5102 168 1e-36 seq3386 138 2e-27 seq3550 134 2e-26 seq31365 129 9e-25 seq695 118 2e-21 >seq5102 Length=101622 Score = 168 bits (186), Expect = 1e-36 Identities = 267/383 (70%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| | || ||||||||||| | ||||| ||| | | | | Sbjct 52316 ACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 52257 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 52256 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 52197 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | || || ||||| || || |||||||| || | Sbjct 52196 CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATT 52137 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| ||||||||||| ||| | ||||| Sbjct 52136 CCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGAT 52077 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | |||||||| || |||| | | || | || |||||| | ||||| | Sbjct 52076 GAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTA 52017 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| | ||||||||| Sbjct 52016 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATC 51957 Query 215675 TGTGTTGCTTACTCCGCACCTGT 215697 |||||| || || || ||||| Sbjct 51956 GCTGTTGCATATTCAGCTCCTGT 51934 >seq3386 Length=136654 Score = 138 bits (152), Expect = 2e-27 Identities = 248/359 (69%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 215655 TAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAG 215714 |||||||| | ||||||| |||||| || || | ||||| | ||||| | | Sbjct 67787 TAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTG 67728 Query 215715 TATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCT-CTGATGCTATGCCACTTGGAATC 215773 | ||| | | |||||| ||| ||| || ||| | |||||| ||||| || ||||| Sbjct 67727 TTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATC 67668 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 |||| || ||||| | |||| |||| ||||||||||| |||| | || ||||||||| Sbjct 67667 TCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAACACATCTTT---ATGCACCCA 67611 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 || ||||||||| | | ||| |||| |||| || | ||| || ||||| | | Sbjct 67610 TTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGAT 67551 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 || | || || ||| | | ||||| | || || | | |||| | || | ||| Sbjct 67550 TCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGT 67491 Query 215954 TACAAGTTCGGACAAGA-GGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011 |||| ||| | ||||| ||| |||| || || ||| ||||||| || ||||| |||| Sbjct 67490 TACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 67432 >seq3550 Length=137586 Score = 134 bits (148), Expect = 2e-26 Identities = 226/326 (69%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 215961 TCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCA 216020 |||| |||||||| ||||| || || ||||||||||| || ||||| ||||| || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 216021 TCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCC 216080 |||| | || || ||||||||| || | | | || |||||| | || || | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 216081 CTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACG 216140 | || | |||||||| ||||| | ||| | || ||| | |||||||| || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 216141 GTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAG 216200 ||||||| || ||||| | ||| || || ||| || ||| ||| |||| | Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 92965 Query 216201 ACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 216260 | || ||||| || ||||||||||||| ||||| || | ||| ||||| |||| Sbjct 92964 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 92905 Query 216261 TCCCATTAGACTTGGCTGCTGCTGAA 216286 |||| ||||| | |||||| |||| Sbjct 92904 TCCCTCTAGACCTAGCTGCTATTGAA 92879 >seq31365 Length=1132 Score = 129 bits (142), Expect = 9e-25 Identities = 225/326 (69%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 215961 TCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCA 216020 |||| |||||||| ||||| || || ||||||||||| || ||||| |||| || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 216021 TCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCC 216080 |||| | || || ||||||||| || | | | || |||||| | || || | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 216081 CTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACG 216140 | || | |||||||| ||||| | ||| | || ||| | |||||||| || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 216141 GTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAG 216200 ||||||| || ||||| | ||| || || ||| || ||| ||| |||| | Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 234 Query 216201 ACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 216260 | || ||||| || ||||||||||||| ||||| || | ||| ||||| |||| Sbjct 233 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 174 Query 216261 TCCCATTAGACTTGGCTGCTGCTGAA 216286 |||| ||||| | |||||| |||| Sbjct 173 TCCCTCTAGACCTAGCTGCTATTGAA 148 >seq695 Length=285002 Score = 118 bits (130), Expect = 2e-21 Identities = 261/390 (67%), Gaps = 1/390 (0%) Strand=Plus/Minus Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 || || ||||| | || | ||||| || || || | || || || |||| ||| || Sbjct 41039 TTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATTTCTGGATCTCTA 40980 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | || || ||||| || || ||||||| || | | || ||| | || || || Sbjct 40979 CTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTAGTTATTGGTTTG 40920 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 | ||| |||| ||||||||||| ||| | ||||| |||||| | |||||||| || ||| Sbjct 40919 CTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATACAATGGCGGTCCT 40861 Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638 | | | || | || |||||| | ||||| | || ||| || | ||| | Sbjct 40860 TATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCGTGAGTTG 40801 Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTA 215698 |||||| || | |||||||| |||||||| | |||| || || | ||| | Sbjct 40800 GAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATATTCAACTCCTATT 40741 Query 215699 TCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCT 215758 | ||| | | | || ||| | | |||||| ||||||| || ||| ||||||| | Sbjct 40740 GCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAATTTTTCTGATGGT 40681 Query 215759 ATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||||| | |||||||||| || |||||| Sbjct 40680 ATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744359913962240