Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq5102 181 1e-40 seq3550 161 1e-34 seq31365 156 5e-33 seq3386 116 4e-21 >seq5102 Length=101622 Score = 181 bits (200), Expect = 1e-40 Identities = 277/395 (70%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||| ||||| ||||||||||| Sbjct 52328 TGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 52269 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 52268 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 52209 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || ||| Sbjct 52208 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCT 52149 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || |||||||| Sbjct 52148 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCG 52089 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || || ||||||||| | ||| || | || |||||| Sbjct 52088 GCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTC 52029 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 52028 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 51969 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGT 170093 || ||||||||| ||| |||||||| ||||| || Sbjct 51968 CGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGT 51934 >seq3550 Length=137586 Score = 161 bits (178), Expect = 1e-34 Identities = 223/311 (72%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 |||| ||||| |||||||| || || || || || || ||||| || ||||| || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||| | |||||||| || |||||| |||| | | || |||||| | ||| | | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 | |||||| | |||||||| ||| | | |||||| |||| ||| | || ||||| |||| Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | || || || ||||| | | || ||| | ||| ||| || ||| |||| | Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTG 92965 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| || ||| | ||||||||||| |||||||| | ||| || || |||| Sbjct 92964 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 92905 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 92904 TCCCTCTAGAC 92894 >seq31365 Length=1132 Score = 156 bits (172), Expect = 5e-33 Identities = 222/311 (71%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 |||| ||||| |||||||| || || || || || || ||||| || |||| || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||| | |||||||| || |||||| |||| | | || |||||| | ||| | | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 | |||||| | |||||||| ||| | | |||||| |||| ||| | || ||||| |||| Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | || || || ||||| | | || ||| | ||| ||| || ||| |||| | Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTG 234 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| || ||| | ||||||||||| |||||||| | ||| || || |||| Sbjct 233 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 174 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 173 TCCCTCTAGAC 163 >seq3386 Length=136654 Score = 116 bits (128), Expect = 4e-21 Identities = 245/362 (68%), Gaps = 5/362 (1%) Strand=Plus/Minus Query 170048 GTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCG 170107 || |||||||||| ||||||| ||| |||||||| |||| || |||| || | Sbjct 67790 GTCTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCA 67731 Query 170108 CTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCT-CAGACGGAATGCCTCTAGGT 170166 |||| |||||| | ||||| ||| ||| ||| ||| | | || || |||| ||| | Sbjct 67730 CTGTTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGA 67671 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||||| | ||| || || |||||| | |||||||| || || |||| | || |||||| Sbjct 67670 ATCTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAACACATCTTT---ATGCAC 67614 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 ||||| || ||| | | | ||| || | |||| | || ||| | ||||| Sbjct 67613 CCATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCAT 67554 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 | ||| | ||||| ||| | | ||||| | || ||| | || || | || | Sbjct 67553 GATTCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAA 67494 Query 170347 GGATACAAATTCGGACAAGA-AGAAGAAACATACAACATTGTTGCAGCACATGGATACTT 170405 || |||| |||| | ||||| ||| |||| || || || | || || ||||| || || Sbjct 67493 GGTTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTT 67434 Query 170406 TG 170407 || Sbjct 67433 TG 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582283453427200