Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq5102 237 2e-57 seq3386 215 6e-51 seq3550 206 3e-48 seq31365 203 4e-47 seq695 172 6e-38 >seq5102 Length=101622 Score = 237 bits (262), Expect = 2e-57 Identities = 299/408 (73%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 84550 CAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTT 84609 |||| ||||| || || |||||| |||||| || |||||||| ||||| | ||||| Sbjct 51932 CAACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTT 51991 Query 84610 CCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGAT 84669 |||| ||||||||||||||| | | |||||| | |||||| || |||| | | || Sbjct 51992 CCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCAT 52051 Query 84670 AAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAAT 84729 |||| || ||||| |||| |||||| || | ||| |||||||| || || || || | Sbjct 52052 AAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGT 52111 Query 84730 GTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACA 84789 | | ||| ||||| ||| | |||| | |||||||||||| || ||||||||||| | Sbjct 52112 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 52171 Query 84790 TGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGA 84849 ||||| |||| || || ||||| ||||| |||||||| ||||| || ||| ||| || Sbjct 52172 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGA 52231 Query 84850 ATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAAC 84908 | || || || || ||||| ||| || | | || || || ||||| | | |||||| Sbjct 52232 AGGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 52290 Query 84909 CAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 || || | || | |||||| | |||| ||| | ||| | ||||||| Sbjct 52291 CATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAG 52338 >seq3386 Length=136654 Score = 215 bits (238), Expect = 6e-51 Identities = 402/590 (68%), Gaps = 24/590 (4%) Strand=Plus/Plus Query 84240 AAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCT-TCTTGACCGAACTTGTAACC 84298 || || || |||||||| | ||||||||||||| || ||||||| ||| ||||||| Sbjct 67434 AAATAACCATGAGCAGCTATGATATTATAAGTTTTTTCCCTCTTGACTGAATCTGTAACC 67493 Query 84299 ATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACC 84358 | || | |||||| ||| |||| | ||| | | ||| || || | ||| | Sbjct 67494 TTCATTAATAAATTCATTTTTTGTGGTTTTCCTGATCAAACTAGAGGTTACCAAAGAATC 67553 Query 84359 ATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGG 84418 |||||| || |||||| | ||||||||| ||| | | ||||||||||| || Sbjct 67554 ATGCATAACATTGAATAGGGAGTTGTCGAATACACTAGCTATGCTTAACATGTGAAATGG 67613 Query 84419 ATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGAT 84478 ||||||| |||| ||||| |||||||| |||| |||| | ||||| || | ||||| Sbjct 67614 GTGCATAAAGATG---TGTTCAGCCTGGAATACAACCATGAAATTGAAAGTAACAGAGAT 67670 Query 84479 ACCAAGTGGCATGCCATCAG-AGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAG 84537 | || |||| ||||||| | ||| ||||| ||| ||||| | | ||| |||| Sbjct 67671 TCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGATTAAGAAAACAG 67730 Query 84538 CAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGAC 84597 | || |||||||| |||| || || |||||| |||||| |||||||| |||| Sbjct 67731 TGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGCGCATACCTAGAC 67790 Query 84598 GATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGA 84657 |||||||||| ||| | | |||||| | |||||| || | Sbjct 67791 ------------------CACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAAAA 67832 Query 84658 CAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAA 84717 ||| | | |||| | || ||||| ||| ||||||||| | || | ||| | | Sbjct 67833 CAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATGTCGATTCTAAGA 67892 Query 84718 TAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGT 84777 | || || ||||| | ||||||||| ||| | ||| | ||||||| |||| ||| Sbjct 67893 TCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCACCAAAAATAATG- 67951 Query 84778 TGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATA 84827 |||||||||| | ||||| | | || || ||||| ||||| |||||| Sbjct 67952 TGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCAATA 68001 >seq3550 Length=137586 Score = 206 bits (228), Expect = 3e-48 Identities = 229/304 (75%), Gaps = 1/304 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || ||| |||| ||||| ||||||||||||| ||| | |||| Sbjct 92901 GGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTAGCATGGTTAATA 92960 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||| |||||| | ||||| ||| ||||| || | | || || || || Sbjct 92961 ATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAATTGGTTAAAATTG 93019 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || | ||||||||||| ||| | ||||| ||||| || || || Sbjct 93020 AAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 93079 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||| ||||||| ||||| || || | ||||||| ||||||||| ||||||| | Sbjct 93080 ACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATACCGA 93139 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 93140 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 93199 Query 84285 CCGA 84288 |||| Sbjct 93200 CCGA 93203 >seq31365 Length=1132 Score = 203 bits (224), Expect = 4e-47 Identities = 228/304 (75%), Gaps = 1/304 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || ||| |||| ||||| ||||||||||||| ||| | |||| Sbjct 170 GGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTAGCATGGTTAATA 229 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||| |||||| | ||||| ||| ||||| || | | || || || || Sbjct 230 ATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAATTGGTTAAAATTG 288 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || | ||||||||||| ||| | ||||| ||||| || || || Sbjct 289 AAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 348 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||| ||||||| ||||| || || | ||||||| ||||||||| ||||||| | Sbjct 349 ACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATACCGA 408 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || | || || || |||||||| || |||||||||||||| || |||||| Sbjct 409 AAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 468 Query 84285 CCGA 84288 |||| Sbjct 469 CCGA 472 >seq695 Length=285002 Score = 172 bits (190), Expect = 6e-38 Identities = 322/472 (68%), Gaps = 1/472 (0%) Strand=Plus/Plus Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520 |||||| || | ||||| || | ||||| |||||||| ||| ||||| |||| || Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580 ||| | | ||| |||| || | ||||||| |||| || || |||| | ||||| Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCA 40770 Query 84581 TGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACC 84640 || ||||||| ||| | | ||||||| | |||||||| |||||| | | |||| Sbjct 40771 AGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACC 40830 Query 84641 AATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCAT 84700 || | |||||| || |||| | | |||||| || ||||| |||| |||||| || | Sbjct 40831 AAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCAAC 40889 Query 84701 ACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTAC 84760 ||| |||||||| || | || || | | ||||||| | ||| | ||| | Sbjct 40890 GGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAATAAT 40949 Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACC 84820 | |||||||||| || ||||||||||| | ||||| |||| | || ||||| ||||| Sbjct 40950 GACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATACC 41009 Query 84821 GTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAG 84880 |||||||| | | | | ||| ||| || | || || || | | ||| || | | Sbjct 41010 ATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTCAA 41069 Query 84881 TAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTA 84932 || || || ||||| | | ||||||| | | ||| | ||| || ||| Sbjct 41070 TAAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTTA 41121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570720264391040