Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6788 122 1e-22 seq6480 118 1e-21 seq2374 111 2e-19 seq12078 107 2e-18 seq1617 105 8e-18 seq4457 102 9e-17 seq2034 100 3e-16 seq7334 96.9 4e-15 seq7183 96.9 4e-15 seq6613 91.5 2e-13 >seq6788 Length=77562 Score = 122 bits (134), Expect = 1e-22 Identities = 303/460 (66%), Gaps = 0/460 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||| | | || | || | |||||||| ||||| ||| Sbjct 9085 CCTCCTTGATCAACATAACGAGCAATGTCATTGAACACCCGCAACATTGGAACAATGCCA 9026 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| |||| ||||||||| || || ||| ||||| || ||| Sbjct 9025 TTAGATGTACCATTTATTCCACGAATATAACTGCCCATACCTCGAATATTGTGAACTGAG 8966 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 8965 ACACCAATCCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTGTCATATATT 8906 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 || || | ||| |||| | |||| || | || || || || ||| || | Sbjct 8905 CCCTCAACACTGTCATTTTTCATGCACAACAAGAAGCAGCTGCTCAATTGAGGTCTTGGA 8846 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || ||||| ||||| |||||| | |||| | | | || | || | | Sbjct 8845 GTTCCAGCATTGAAAAATGTGGGAGAAGCATGAGTGAACCCTCTTTGAGACATCATGTGA 8786 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || | || ||| ||||| | || || | ||| || || | | | | ||||||| Sbjct 8785 TAAGATTTTATAGCAGAACCAATGTCATCCTTATGAATTCCAACTGCATCCCTCATTAAC 8726 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | |||||| ||||| | || || | | ||||| ||| || || | || | Sbjct 8725 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGGACTTTCAGAAGGTAGGACCTCTCAAGG 8666 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| ||||||||||| | || |||||| ||||| Sbjct 8665 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCAT 8626 >seq6480 Length=82479 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||| |||| | ||||| ||||||| || | || | | |||||||||||| ||| Sbjct 6703 CCTCCTAGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 6762 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||||||||| || | || | || ||| || |||| Sbjct 6763 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCCCGAATGTTATGAACTGAA 6822 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | || ||||| ||| Sbjct 6823 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 6882 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 6883 CCTTCAATACTATCATCTTTCAT 6905 >seq2374 Length=163246 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| | | |||| | |||||||||||| ||| Sbjct 2661 CCTCCTTGATCAACATAACGGGCAGTATCATCGAACACTCGAAGCATTGGGACAATTCCA 2602 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| || | || | || || ||||||| Sbjct 2601 TTAGAGGTGCCATTTGTTCCACGAATATAACTACCTGTGGCCCGAATGTTGTGAATTGAA 2542 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | || ||||| ||| Sbjct 2541 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 2482 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| ||||||||||| |||| || || || ||||| Sbjct 2481 CCTTCAATACTATCATCCTTCATGCACAAAAGGAAGCAACT 2441 >seq12078 Length=35335 Score = 107 bits (118), Expect = 2e-18 Identities = 555/878 (63%), Gaps = 8/878 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| || || ||| |||||||||| || |||||||| ||||| || | || || || Sbjct 4903 TTTCTGGTACTCGCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAG 4844 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| || ||| ||||| |||||||| | ||||| || || Sbjct 4843 TTCCATCCAATCAAAAGGGTTTGCAACATTGTATATTTTCCCGTGCCCTAAAGCTCCCAG 4784 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | | ||||||||| || | || || |||||| ||| | ||||| |||| ||| Sbjct 4783 CAACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCCGTTCATCCCTACTAA 4724 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | || || || || | ||| ||| || || | || |||||| || || Sbjct 4723 CGCACAGGGCAGAGCGTCGCACACAAACTCTCTCTCAATGTCAACAGCCTCTCTTACTAT 4664 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 || | ||||| | | | | || | | ||| ||| || ||||| Sbjct 4663 CCCCTTCACGCGCTCTTCGCTCAGCTTTGACCGGAGGAGATCGTACAGCAAGCAAGCAAA 4604 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| || || || || || |||| || || || || || || ||||| |||||||| Sbjct 4603 ATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCAT 4544 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTT 19087 || || | ||||| ||||| ||||| | ||| || |||||| || || || || | Sbjct 4543 CAACCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAACTTCCAGAGAAAAAGATCCCCT 4485 Query 19088 CTACTGCT-GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 | | ||| |||||||| | | | || | || | | | || |||||| Sbjct 4484 CAA-TGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCCGCCGTTG---ATCCAT 4429 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 |||| ||||| || ||||| || || || || | || || | | | || || Sbjct 4428 TTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGGCACGGAAGAGG 4369 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | || || | |||||| | || | || | | | ||||||||| || || Sbjct 4368 CGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACTGTACATCTCGGAG 4309 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || |||||||| || || ||||| || ||||| ||| | || || | || || || Sbjct 4308 TGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCACGCGCCTCGGAGATTTGGACC 4249 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | || | || | | ||||||| || || |||||| ||||||||||| Sbjct 4248 TCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGAGGCTGCAAAAAAG 4189 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATA 19446 || | || || | || || || || || | ||| | || | ||| | | | | Sbjct 4188 GCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCCCAGTGACGGAGA 4129 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || ||| ||||| ||||| || | |||||||| || || || ||||| || ||||| Sbjct 4128 TCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCGGCTTTCTTGTACATT 4069 Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||||| | | ||||| || ||||| || ||||| Sbjct 4068 TCCCATACTTGTGGGTATTGGATCGGAAACAT-ACAAA 4032 >seq1617 Length=204607 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | || |||||||| ||| ||| Sbjct 197444 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGTAGCATTGGGATAATTCCA 197503 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| ||| | || | || || | |||| Sbjct 197504 TTAGAGGTGCCATTTGTTCCACGAATATAACTACCAGTGGCCCGAATGTTGTGCACTGAA 197563 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 ||||| ||||| || || ||| || | ||||||| || | || ||||| ||| Sbjct 197564 ATACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTGTCATATATT 197623 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| ||||||||||| |||| Sbjct 197624 CCTTCAATACTATCATCCTTCAT 197646 >seq4457 Length=113508 Score = 102 bits (112), Expect = 9e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 |||||| ||||||||||| ||| ||||||| |||||| |||||||||| || |||||| Sbjct 103119 CATTGGAACAATACCATTAGATGTACCATTTGTTCCCCAAATATAACTACCTATAGCTCG 103178 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 |||||| || ||| | ||| || || |||| ||| |||| ||||||| || Sbjct 103179 AATATTATGAACTGAGACACCAATCCCGCCTGTTGATTTGCTGATTATAGCACACTCCTT 103238 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 | | ||||| ||||| | ||||| |||||| |||| Sbjct 103239 CAAAGCGTCATATATTCCCTAAATACTGTCATCTTTCAT 103277 >seq2034 Length=191459 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | |||||||||||| ||| Sbjct 144290 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 144349 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| || | || | || || || |||| Sbjct 144350 TTAGAGGTGCCATTTGTTCCACGAATATAACTGCCCATGGCCCGAATGTTGTGAACTGAA 144409 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | || ||||| ||| Sbjct 144410 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 144469 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| ||||||||||| |||| Sbjct 144470 CCTTCAATACTATCATCCTTCAT 144492 >seq7334 Length=105305 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | || | || | |||||||| ||||| ||| Sbjct 97852 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAACATTGGAACAATGCCA 97911 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||||||||| | |||||| ||||| || ||| Sbjct 97912 TTAGATGTACCATTTGTTCCATGAATATAACTGCTCATAGCTCGAATATTGTGAACTGAG 97971 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| | | || ||||| ||| Sbjct 97972 ACACCAATCCCTCCAGCTGATTTGCTGATGATAGCACACTCCATCAAAGTGTCATATATT 98031 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||| |||||| |||| Sbjct 98032 CCCTCAATACTGTCATCTTTCAT 98054 >seq7183 Length=77289 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 ||||||||| | ||||| ||| ||| || | || | | ||||||| ||| ||||| Sbjct 23361 TCCTTGATCAACATATCGAGCATTATCATTGAACACCCGCAGTATTGGGATAATTCCATT 23302 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 ||| ||||||| ||| | ||||||||| || | || | || ||| || ||||| Sbjct 23301 AGATGTACCATTTGTTACACGAATATAACTACCTGTGGCCCAAATGTTATGAACTGAAAC 23242 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| ||||| || || ||| || | | ||||| || | || ||||| ||||| Sbjct 23241 ACCAATACCTCCAGCTGATTTGCTGATAACAACACACTCCTTCAAAGTTTCATATATTCC 23182 Query 48542 TTCTATACTATCATCTATCAT 48562 ||| |||||||||||| |||| Sbjct 23181 TTCAATACTATCATCTTTCAT 23161 >seq6613 Length=80294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | || | || | |||||||| ||||| ||| Sbjct 46737 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAACATTGGAACAATGCCA 46678 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||||||||| | |||||| ||||| || ||| Sbjct 46677 TTAAATGTACCATTTGTTCCTCGAATATAACTGCTCATAGCTCGAATATTGTGAACTGAG 46618 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 46617 ACACCAATCCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTGTCATATATT 46558 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||| || ||| |||| Sbjct 46557 CCCTCAATACTGTCTTCTTTCAT 46535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561564341416320