Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq5102 185 3e-42 seq3550 179 1e-40 seq31365 176 1e-39 seq695 136 1e-27 >seq5102 Length=101622 Score = 185 bits (204), Expect = 3e-42 Identities = 286/403 (71%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 52337 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 52278 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | |||||||| || || || Sbjct 52277 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 52219 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | ||||||||||| Sbjct 52218 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 52159 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || ||||||||||| Sbjct 52158 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 52099 Query 26041 CTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || || ||| ||||||||||||| || ||| | | ||| Sbjct 52098 CTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTG 52040 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | || ||||||||| | || ||||| || || | |||||||||| || | Sbjct 52039 TTTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 51980 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACC 26202 | || || ||| | || ||||| |||||||||| |||| || Sbjct 51979 GTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCC 51937 >seq3550 Length=137586 Score = 179 bits (198), Expect = 1e-40 Identities = 229/314 (73%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 26471 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATT 26530 || ||||| ||||| || |||||||| || ||||| || || || ||||| |||| || Sbjct 93201 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 93142 Query 26531 TTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCG 26590 |||| |||||| ||||| || || |||||| | |||||||| | ||| ||| ||| Sbjct 93141 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 93082 Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | ||||| |||| ||| | || |||||||||||| Sbjct 93081 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 93022 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT 26710 || || |||||||| | ||||| ||| | | || |||| ||| |||||||| Sbjct 93021 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 92963 Query 26711 GTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTT 26770 | | |||| |||||| | || | ||||||||||| || | ||| ||||||||||| Sbjct 92962 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 92903 Query 26771 CCACTTGACTTAGC 26784 || || ||| |||| Sbjct 92902 CCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 176 bits (194), Expect = 1e-39 Identities = 228/314 (73%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 26471 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATT 26530 || ||||| ||||| || |||||||| || ||||| || || || |||| |||| || Sbjct 470 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGATC 411 Query 26531 TTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCG 26590 |||| |||||| ||||| || || |||||| | |||||||| | ||| ||| ||| Sbjct 410 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 351 Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | ||||| |||| ||| | || |||||||||||| Sbjct 350 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 291 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT 26710 || || |||||||| | ||||| ||| | | || |||| ||| |||||||| Sbjct 290 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 232 Query 26711 GTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTT 26770 | | |||| |||||| | || | ||||||||||| || | ||| ||||||||||| Sbjct 231 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 172 Query 26771 CCACTTGACTTAGC 26784 || || ||| |||| Sbjct 171 CCTCTAGACCTAGC 158 >seq695 Length=285002 Score = 136 bits (150), Expect = 1e-27 Identities = 322/474 (68%), Gaps = 13/474 (3%) Strand=Plus/Minus Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACT 25888 || ||||| ||| | ||||||| | || | ||||| || |||| | | || ||| Sbjct 41117 AATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGATCCCTACCTTATTGACCGCAACT 41058 Query 25889 ACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAG 25948 | ||||| | | ||| || || || | | ||||||| ||||| || ||||| Sbjct 41057 TTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAA 40998 Query 25949 CCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG-CAGTCGTCCC-CT 26006 || |||| || || || | ||||||||||| || || || || | || | || || Sbjct 40997 CCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACT 40938 Query 26007 CCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAG 26065 || || | || || | | ||||||| |||||||||||| |||| | | || || Sbjct 40937 TCTGTA--GTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGC-GGCATCCGTTGATGAA 40881 Query 26066 TGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCA 26125 ||| ||||||||||||| || ||| | | ||| | || ||||||||| | || ||||| Sbjct 40880 TGG-TATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCT 40822 Query 26126 GCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTT 26185 || ||| | ||| |||||| || | ||||| ||| || ||||| | Sbjct 40821 TGTTACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCT 40762 Query 26186 GTTGCATATACAGCACCACTATCCGCAGCT-CT--CGCAGTGTTCTTAGTTTATCCTTTC 26242 |||||||| || || |||| |||||| || | || ||||| | ||||| || Sbjct 40761 ATTGCATATTCA--ACTCCTAT-TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATC 40705 Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAAC 26296 || ||||||| |||| |||||| |||||| | || ||||||| |||||| ||| Sbjct 40704 GGTCAAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146591386768512