Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq5102 210 7e-50 seq695 168 2e-37 seq3550 163 9e-36 seq31365 159 1e-34 seq3386 129 2e-25 >seq5102 Length=101622 Score = 210 bits (232), Expect = 7e-50 Identities = 290/406 (71%), Gaps = 0/406 (0%) Strand=Plus/Plus Query 36550 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTT 36609 ||||||| |||||||| || ||| ||||| || | |||||| || | ||||||||| Sbjct 51932 CAACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTT 51991 Query 36610 CCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGAT 36669 |||| | || |||| |||| | | ||||| | ||||| || ||||| | | || Sbjct 51992 CCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCAT 52051 Query 36670 ATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGT 36729 | || || || || |||||||| || || | || ||| ||||||||||| ||||| |||| Sbjct 52052 AAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGT 52111 Query 36730 GAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGA 36789 | | ||| || || || | || | || || ||||| || || |||||||| || | Sbjct 52112 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 52171 Query 36790 GTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAA 36849 ||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| | Sbjct 52172 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGA 52231 Query 36850 ATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACC 36909 | || || | |||| | | ||| || || | | ||||||||| | || ||||||| Sbjct 52232 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 52291 Query 36910 ACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 | || | || || ||||| | || || || | ||||| ||| || Sbjct 52292 ATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq695 Length=285002 Score = 168 bits (186), Expect = 2e-37 Identities = 320/470 (68%), Gaps = 1/470 (0%) Strand=Plus/Plus Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521 |||||||| | || || || | ||||||||||||||| ||| ||||||| || | || Sbjct 40652 TTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGGA 40711 Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 36581 |||| ||||| |||| | | ||||||| ||| | |||||| || | | ||||| Sbjct 40712 TAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCAA 40771 Query 36582 GGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCA 36641 || ||||||||| ||||||||||| | | || || | |||| | | |||| Sbjct 40772 GGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACCA 40831 Query 36642 ATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGG 36701 | | ||||| || ||||| | | ||| || || || || ||| |||| || || | | Sbjct 40832 AGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTAT-ACCATTCATCAACG 40890 Query 36702 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT 36761 | ||| ||||||||||| |||| ||| | | ||| || | || | | | || Sbjct 40891 GATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAATAATG 40950 Query 36762 GCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 36821 | ||||| || || |||||||| || |||| | ||| || | ||| |||||||||||| Sbjct 40951 ACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATACCA 41010 Query 36822 TCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAA 36881 || ||||| | || | ||||||| ||| | || | |||| ||| || || Sbjct 41011 TCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTCAAT 41070 Query 36882 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 36931 | | ||||||||||| || ||||||| | | ||| || || || || Sbjct 41071 AAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTT 41120 >seq3550 Length=137586 Score = 163 bits (180), Expect = 9e-36 Identities = 229/320 (72%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||| | ||||||||||||||||| || || Sbjct 92885 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 92944 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||| |||||| ||| ||||||| || | || | || | |||||| || Sbjct 92945 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTAC 93003 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || || || || || || || || || |||| ||| ||| | || | ||| || Sbjct 93004 AAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 93063 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | |||||| ||||||| | ||||||||||||| || ||| || Sbjct 93064 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 93123 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || ||||||||| | ||||| | || ||||| || |||||||| || || || ||||| Sbjct 93124 GAAACTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 93183 Query 36269 CGTCTCTTCTTCTTGGCCGA 36288 || ||||| ||||| |||| Sbjct 93184 AGTTTCTTCCTCTTGACCGA 93203 >seq31365 Length=1132 Score = 159 bits (176), Expect = 1e-34 Identities = 228/320 (71%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||| | ||||||||||||||||| || || Sbjct 154 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 213 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||| |||||| ||| ||||||| || | || | || | |||||| || Sbjct 214 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTAC 272 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || || || || || || || || || |||| ||| ||| | || | ||| || Sbjct 273 AAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 332 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | |||||| ||||||| | ||||||||||||| || ||| || Sbjct 333 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 392 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || ||||||||| | ||||| | || |||| || |||||||| || || || ||||| Sbjct 393 GAAACTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATA 452 Query 36269 CGTCTCTTCTTCTTGGCCGA 36288 || ||||| ||||| |||| Sbjct 453 AGTTTCTTCCTCTTGACCGA 472 >seq3386 Length=136654 Score = 129 bits (142), Expect = 2e-25 Identities = 281/422 (67%), Gaps = 23/422 (5%) Strand=Plus/Plus Query 36407 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 36466 ||| || || || ||||||| ||| |||||| ||||| || |||| ||| |||||||| Sbjct 67602 CATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658 Query 36467 AGTCCCTGAAATACCAAGAGGCATACCATCAG-AGAAACTCCCTTGTCCAAAAGGGTAGA 36525 ||| | || || | || |||||||||||| | ||||| ||||| | | || |||| Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718 Query 36526 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 36585 |||||| |||| || ||||||||||| | |||||| || ||| ||||| | Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGC 67778 Query 36586 TCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGA 36645 ||||||||| | | || |||| ||| | | ||||| | Sbjct 67779 GCATACCTAGACCA------------------CGACCCATATAACAAGCTACACCAAGTA 67820 Query 36646 GAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTG 36705 ||||| || ||||| | | ||| | || || || ||||||| ||||| | || || Sbjct 67821 AGAAGTGTAAAACAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATG 67880 Query 36706 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCC 36765 | ||| |||| ||||| || || | ||| || || || | | | || || | Sbjct 67881 TCGATTCTAAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCAC 67940 Query 36766 CAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTA 36825 || | || ||| ||||||| || |||| | || | ||||| |||||||||||||| | Sbjct 67941 CAAAAATAATG-TGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCAA 67999 Query 36826 TA 36827 || Sbjct 68000 TA 68001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150315956374752