Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq5102 217 4e-52 seq3550 172 2e-38 seq31365 168 2e-37 seq695 154 4e-33 seq3386 100 9e-17 >seq5102 Length=101622 Score = 217 bits (240), Expect = 4e-52 Identities = 294/408 (72%), Gaps = 4/408 (1%) Strand=Plus/Plus Query 5772 CAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTT 5831 |||| || ||||||||||| || ||||| || ||||| || | | | ||||||||| Sbjct 51932 CAACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTT 51991 Query 5832 CCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGT 5891 |||| | || |||| |||| || | ||||| | |||||| || || | | | | Sbjct 51992 CCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCAT 52051 Query 5892 ATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAA 5949 | || || |||||||| | ||||||||| | ||| || ||||||||||| || || || Sbjct 52052 AAGGACCGCCATTGTATAACCATTCATCAACGGAT--GCCGCTTCCCAGATCGGGTAAAA 52109 Query 5950 GTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATA 6009 ||| || || || || || | || | || ||| || || || || |||||||| || Sbjct 52110 GTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 52169 Query 6010 GAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTAC 6069 ||||||||||| | || |||||||| || || || || || ||||| || ||||| | Sbjct 52170 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAAT 52229 Query 6070 GAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAA 6129 ||| || | |||||| ||| ||||||||| || | | || ||||| || |||||||| Sbjct 52230 GAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAA 52289 Query 6130 CCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| || | || || ||||| | ||||| || | ||||| |||||| Sbjct 52290 CCATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq3550 Length=137586 Score = 172 bits (190), Expect = 2e-38 Identities = 231/320 (72%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| ||||| || |||| ||||| ||||||||||||| Sbjct 92885 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 92944 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||| |||| | | ||| |||| || || | | ||| | ||||| || Sbjct 92945 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTAC 93003 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 | || || || || || || || || || |||| ||| ||| || || | || || Sbjct 93004 AAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 93063 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || |||||| ||| ||| | ||||||||||||| ||| |||||| Sbjct 93064 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 93123 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || ||||||||| | ||||| | || ||||| || |||||||| || || || ||||| Sbjct 93124 GAAACTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 93183 Query 5491 CGTTTCTTCCTCTTGGCCGA 5510 |||||||||||||| |||| Sbjct 93184 AGTTTCTTCCTCTTGACCGA 93203 >seq31365 Length=1132 Score = 168 bits (186), Expect = 2e-37 Identities = 230/320 (72%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| ||||| || |||| ||||| ||||||||||||| Sbjct 154 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 213 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||| |||| | | ||| |||| || || | | ||| | ||||| || Sbjct 214 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTAC 272 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 | || || || || || || || || || |||| ||| ||| || || | || || Sbjct 273 AAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 332 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || |||||| ||| ||| | ||||||||||||| ||| |||||| Sbjct 333 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 392 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || ||||||||| | ||||| | || |||| || |||||||| || || || ||||| Sbjct 393 GAAACTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATA 452 Query 5491 CGTTTCTTCCTCTTGGCCGA 5510 |||||||||||||| |||| Sbjct 453 AGTTTCTTCCTCTTGACCGA 472 >seq695 Length=285002 Score = 154 bits (170), Expect = 4e-33 Identities = 322/474 (68%), Gaps = 7/474 (1%) Strand=Plus/Plus Query 5683 GTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGG 5742 ||| |||||| ||||||| || | ||||||||||||| ||| | || || |||| || Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 5743 GTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCC 5801 || | || || || | |||| | || |||| || | ||||||||| | ||||| Sbjct 40711 ATAGATCAAGAAAACAGTAGTA-GTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCC 40769 Query 5802 ATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATAC 5861 | || |||| |||| | ||||||||||| | | || || | |||| || | || Sbjct 40770 AAGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACAC 40829 Query 5862 CAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA 5921 ||| | |||||| || || | | | || || || |||||||| | ||||||||| | Sbjct 40830 CAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCAA 40888 Query 5922 --GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 ||| || ||||||||||| | || ||| | || ||||| | || | | | Sbjct 40889 CGGAT--GCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAAT 40946 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || | | || || || || |||||||| || ||||||||||| | | |||||||| || Sbjct 40947 AATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAAT 41006 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || | | | | ||||| | || | | |||||| | ||||||||| Sbjct 41007 ACCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGT 41066 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153 || | | || |||||||| ||| ||||||| | | ||| || || || || Sbjct 41067 CAATAAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTT 41120 >seq3386 Length=136654 Score = 100 bits (110), Expect = 9e-17 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 5607 CGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCT 5666 ||||||| | ||| | | | |||||| || || ||||||| ||| |||||| |||| Sbjct 67580 CGAATACACTAGCTATGCTTAACATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCT 67636 Query 5667 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCA-CTGAAA 5725 ||||||| | ||| || || |||||| ||||||| | || ||||||||||| ||| Sbjct 67637 GGAATACAACCATGAAATTGAAAGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAA 67696 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAA 5785 ||||| || ||| || || | ||| || || | | || || ||||| || | |||| Sbjct 67697 CTTCCTTGATCGATTGGATAGATTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAA 67756 Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTA 5816 ||||| || ||||| ||||| |||| Sbjct 67757 TATGCAACAGCGATCCAATAGCGCATACCTA 67787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152509136417568