Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq5102 192 2e-44 seq3550 165 2e-36 seq31365 161 3e-35 seq695 150 5e-32 seq3386 114 4e-21 >seq5102 Length=101622 Score = 192 bits (212), Expect = 2e-44 Identities = 286/406 (70%), Gaps = 0/406 (0%) Strand=Plus/Plus Query 26030 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTT 26089 ||||||| |||||||| || ||| ||||| || | ||| || || | ||||||||| Sbjct 51932 CAACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTT 51991 Query 26090 CCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGAT 26149 |||| | || |||| |||| | | || | | ||||| || ||||| | | || Sbjct 51992 CCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCAT 52051 Query 26150 ATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGT 26209 | || || || || || ||||| || || | || ||| ||||||||||| ||||| |||| Sbjct 52052 AAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGT 52111 Query 26210 GAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGA 26269 | | ||| || || ||| | || | || || || || || || |||||||| || | Sbjct 52112 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 52171 Query 26270 GTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAA 26329 ||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| | Sbjct 52172 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGA 52231 Query 26330 ATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACC 26389 | || || | |||| | | ||| || || | | ||||||||| | || ||||||| Sbjct 52232 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 52291 Query 26390 ACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 | || | || || ||||| | || || || | ||||| ||| || Sbjct 52292 ATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq3550 Length=137586 Score = 165 bits (182), Expect = 2e-36 Identities = 227/316 (72%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||| | ||||||||||||||||| || |||| Sbjct 92889 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 92948 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||| |||||| ||| ||||||| || | || | || | |||||| || | Sbjct 92949 GCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAAT 93007 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || || || || || || || || || |||| ||| ||| | || | ||| || | | Sbjct 93008 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 93067 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | |||||| ||||||| | ||||||||||||| ||| ||| || || Sbjct 93068 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 93127 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 ||||||||| | ||||| | || ||||| || |||||||| || || || ||||| || Sbjct 93128 CTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 93187 Query 25753 TCTTCTTCTTGGCCGA 25768 ||||| ||||| |||| Sbjct 93188 TCTTCCTCTTGACCGA 93203 >seq31365 Length=1132 Score = 161 bits (178), Expect = 3e-35 Identities = 226/316 (72%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||| | ||||||||||||||||| || |||| Sbjct 158 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 217 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||| |||||| ||| ||||||| || | || | || | |||||| || | Sbjct 218 GCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAAT 276 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || || || || || || || || || |||| ||| ||| | || | ||| || | | Sbjct 277 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 336 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | |||||| ||||||| | ||||||||||||| ||| ||| || || Sbjct 337 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 396 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 ||||||||| | ||||| | || |||| || |||||||| || || || ||||| || Sbjct 397 CTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAGTT 456 Query 25753 TCTTCTTCTTGGCCGA 25768 ||||| ||||| |||| Sbjct 457 TCTTCCTCTTGACCGA 472 >seq695 Length=285002 Score = 150 bits (166), Expect = 5e-32 Identities = 316/470 (67%), Gaps = 1/470 (0%) Strand=Plus/Plus Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| | || || || | ||||||||||||||| ||| ||||||| || | || Sbjct 40652 TTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGGA 40711 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| |||| | | ||||||| ||| | |||||| || | | ||||| Sbjct 40712 TAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCAA 40771 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCG 26121 || ||| ||||| ||||||||||| | | || || | |||| | | || Sbjct 40772 GGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACCA 40831 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| || ||||| | | ||| || || || || || |||| || || | | Sbjct 40832 AGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTA-TACCATTCATCAACG 40890 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT 26241 | ||| ||||||||||| |||| ||| | | ||| || | ||| | | | || Sbjct 40891 GATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAATAATG 40950 Query 26242 GCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 26301 | || || || || |||||||| || |||| | ||| || | ||| |||||||||||| Sbjct 40951 ACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATACCA 41010 Query 26302 TCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAA 26361 || ||||| | || | ||||||| ||| | || | |||| ||| || || Sbjct 41011 TCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTCAAT 41070 Query 26362 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 26411 | | ||||||||||| || ||||||| | | ||| || || || || Sbjct 41071 AAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTT 41120 >seq3386 Length=136654 Score = 114 bits (126), Expect = 4e-21 Identities = 278/422 (66%), Gaps = 23/422 (5%) Strand=Plus/Plus Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946 ||| || || || ||||||| ||| |||||| ||||| || |||| ||| |||||||| Sbjct 67602 CATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658 Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAG-AGAAACTCCCTTGTCCAAAAGGGTAGA 26005 ||| | || || | || |||||||||||| | ||||| ||||| | | || |||| Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718 Query 26006 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 26065 |||||| |||| || ||||||||||| | |||||| || ||| ||||| | Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGC 67778 Query 26066 TCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGA 26125 ||| ||||| | | || |||| ||| | | || | | Sbjct 67779 GCATACCTAGACCA------------------CGACCCATATAACAAGCTACACCAAGTA 67820 Query 26126 GAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTG 26185 ||||| || ||||| | | ||| | || || || | ||||| ||||| | || || Sbjct 67821 AGAAGTGTAAAACAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATG 67880 Query 26186 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCC 26245 | ||| |||| ||||| || || | ||| || || ||| | | | | || || | Sbjct 67881 TCGATTCTAAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCAC 67940 Query 26246 CTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTA 26305 | | || ||| ||||||| || |||| | || | ||||| |||||||||||||| | Sbjct 67941 CAAAAATAATG-TGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCAA 67999 Query 26306 TA 26307 || Sbjct 68000 TA 68001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151853740049088