Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3830 84.2 3e-11 >seq3830 Length=201672 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/157 (75%), Gaps = 14/157 (9%) Strand=Plus/Minus Query 147843 TAGTTTTATTTCAAATGAAGATTTGACTGaattatataatattcttattaa-aacataat 147901 || |||||||| || ||| || | || ||| ||||||| ||||| | || || || Sbjct 1860 TATTTTTATTTTAATAGAATATAT---TGGATT---TAATATTTTTATTTATAAAATTAT 1807 Query 147902 ttaaataatatatttaaatatataacaatgaccgatacactattaaataaattGTTTCCT 147961 |||||||||| || |||| |||| | |||| | | | ||||||||||||| || || Sbjct 1806 ATAAATAATATTTT--AATA-ATAATATTGACATAAATATTATTAAATAAATTATT--CT 1752 Query 147962 GATATTGTTAA--TAATAATATTAAAGTTATAAAATA 147996 ||||| |||| |||||||||||| ||||| |||| Sbjct 1751 AATATTTTTAAAATAATAATATTAAGTTTATATAATA 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591743081947520