Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq17129 107 4e-18 seq3999 107 4e-18 >seq17129 Length=12942 Score = 107 bits (118), Expect = 4e-18 Identities = 356/542 (66%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 150296 GATCTTGCAG--CAGA-AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GA 150351 ||||||| || ||| ||| |||||||||||| | |||||||| || ||| | || Sbjct 8195 GATCTTGTAGAGCAGGCAGGCAAACTTGATCCAGTTATTGGTCGAGACGAGGAAATCCGA 8136 Query 150352 TGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAA 150409 | | | | || || || | | ||| || || ||| ||| | ||| | || ||| Sbjct 8135 AGGGTTG-TCCGAATCCTCTCGAGGAGAACTAAGAACAATCCGGTTC-TTA-TCGGGGAA 8079 Query 150410 CCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGAT 150469 || ||||| |||||||| | | || || || || || ||| | || | | || ||| Sbjct 8078 CCTGGTGTCGGTAAAACTGCAGTTGTAGAGGGTTTGGCTCAAAGAATTGTGAGAGGGGAT 8019 Query 150470 GTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCT 150529 ||||| | | | | ||||| | || || | ||| | ||||||||||| ||| Sbjct 8018 GTTCCTAGTAATCTCAGCGATGTGAGAGTTATTGCGTTGGACATGGGTGCATTGGTTGCC 7959 Query 150530 GGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAA 150587 || | || ||||||||||||||||| ||| | || || | | || | ||||| | Sbjct 7958 GGAGCGAAATATCGTGGTGAATTCGAGGAAAGATTGAAGGC--TGTGTTGAAAGAAGTCG 7901 Query 150588 AAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTG 150644 | ||| ||| | | || ||||| |||||||||||||||||| | | ||||| | Sbjct 7900 AGGAAGCCGAAGGAAAAGTGATTCTCTTCATCGATGAAATCCATTTAGTGCTCGGTGCCG 7841 Query 150645 GTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCG 150704 || ||| | ||||| ||||| | || | || || ||| || |||| | Sbjct 7840 GTCGAACT---GAGGGTTCCATGGATGCGGCTAACCTCTTTAAGCCTATGCTTGCTCGGG 7784 Query 150705 GTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAG 150764 || || |||| ||||||||| ||||| || |||||| | || | ||||||| | Sbjct 7783 GTCAACTTCGATGCATCGGTGCCACAACACTTGAGGAATATAGGAAGTATGTTGAAAAGG 7724 Query 150765 ATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAA 150824 |||| ||| | | || | ||| ||||| || | | ||| |||| ||| ||| | Sbjct 7723 ATGCCGCATTTGAACGAAGGTTCCAACAGGTTTATGTAGCTGAGCCGAGTGTTGCAGATA 7664 Query 150825 CT 150826 || Sbjct 7663 CT 7662 >seq3999 Length=232996 Score = 107 bits (118), Expect = 4e-18 Identities = 356/542 (66%), Gaps = 19/542 (4%) Strand=Plus/Plus Query 150296 GATCTTGCAG--CAGA-AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GA 150351 ||||||| || ||| ||| |||||||||||| | |||||||| || ||| | || Sbjct 27575 GATCTTGTAGAGCAGGCAGGCAAACTTGATCCAGTTATTGGTCGAGACGAGGAAATCCGA 27634 Query 150352 TGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAA 150409 | | | | || || || | | ||| || || ||| ||| | ||| | || ||| Sbjct 27635 AGGGTTG-TCCGAATCCTCTCGAGGAGAACTAAGAACAATCCGGTTC-TTA-TCGGGGAA 27691 Query 150410 CCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGAT 150469 || ||||| |||||||| | | || || || || || ||| | || | | || ||| Sbjct 27692 CCTGGTGTCGGTAAAACTGCAGTTGTAGAGGGTTTGGCTCAAAGAATTGTGAGAGGGGAT 27751 Query 150470 GTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCT 150529 ||||| | | | | ||||| | || || | ||| | ||||||||||| ||| Sbjct 27752 GTTCCTAGTAATCTCAGCGATGTGAGAGTTATTGCGTTGGACATGGGTGCATTGGTTGCC 27811 Query 150530 GGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAA 150587 || | || ||||||||||||||||| ||| | || || | | || | ||||| | Sbjct 27812 GGAGCGAAATATCGTGGTGAATTCGAGGAAAGATTGAAGGC--TGTGTTGAAAGAAGTCG 27869 Query 150588 AAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTG 150644 | ||| ||| | | || ||||| |||||||||||||||||| | | ||||| | Sbjct 27870 AGGAAGCCGAAGGAAAAGTGATTCTCTTCATCGATGAAATCCATTTAGTGCTCGGTGCCG 27929 Query 150645 GTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCG 150704 || ||| | ||||| ||||| | || | || || ||| || |||| | Sbjct 27930 GTCGAACT---GAGGGTTCCATGGATGCGGCTAACCTCTTTAAGCCTATGCTTGCTCGGG 27986 Query 150705 GTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAG 150764 || || |||| ||||||||| ||||| || |||||| | || | ||||||| | Sbjct 27987 GTCAACTTCGATGCATCGGTGCCACAACACTTGAGGAATATAGGAAGTATGTTGAAAAGG 28046 Query 150765 ATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAA 150824 |||| ||| | | || | ||| ||||| || | | ||| |||| ||| ||| | Sbjct 28047 ATGCCGCATTTGAACGAAGGTTCCAACAGGTTTATGTAGCTGAGCCGAGTGTTGCAGATA 28106 Query 150825 CT 150826 || Sbjct 28107 CT 28108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146451055037024