Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq5102 205 1e-47 seq3550 197 2e-45 seq31365 192 6e-44 seq695 161 1e-34 seq3386 111 2e-19 >seq5102 Length=101622 Score = 205 bits (226), Expect = 1e-47 Identities = 286/401 (71%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || |||| ||||| ||||| |||||| Sbjct 52334 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATG 52275 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || || || |||||||| || |||||| Sbjct 52274 ATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCA 52215 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || || || ||||| || Sbjct 52214 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATT 52155 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | ||||| || || |||||| Sbjct 52154 ATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGG 52095 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| || ||||| || |||| | | | || || Sbjct 52094 GAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTA 52035 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 52034 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 51975 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGT 162902 |||||||| ||||||||| ||||||||| || || || || Sbjct 51974 GGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGT 51934 >seq3550 Length=137586 Score = 197 bits (218), Expect = 2e-45 Identities = 239/323 (74%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 163166 TCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGA 163225 |||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || |||| Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 163226 TCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCC 163285 |||| | |||||| ||||||||| || ||||| | || |||||| | ||||| | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 163286 CTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACG 163345 | || || | |||||||||||||| | ||| | || ||| | |||||||| || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 163346 GTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGG 163402 ||||||| || ||||||| || ||||| |||| || || ||| ||| ||| Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGT---GTAATTAATAC-CGGG 92968 Query 163403 CAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACA 163462 | ||||| ||||| || ||||||||||||||||||| || | ||| ||||| | Sbjct 92967 CTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATA 92908 Query 163463 ACTTCCCACTTGACCTTGCTGCT 163485 ||||||| || ||||| |||||| Sbjct 92907 ACTTCCCTCTAGACCTAGCTGCT 92885 >seq31365 Length=1132 Score = 192 bits (212), Expect = 6e-44 Identities = 238/323 (74%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 163166 TCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGA 163225 |||| ||||| ||||| ||||| || || || ||||||||||| || |||| || |||| Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 163226 TCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCC 163285 |||| | |||||| ||||||||| || ||||| | || |||||| | ||||| | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 163286 CTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACG 163345 | || || | |||||||||||||| | ||| | || ||| | |||||||| || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 163346 GTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGG 163402 ||||||| || ||||||| || ||||| |||| || || ||| ||| ||| Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGT---GTAATTAATAC-CGGG 237 Query 163403 CAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACA 163462 | ||||| ||||| || ||||||||||||||||||| || | ||| ||||| | Sbjct 236 CTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATA 177 Query 163463 ACTTCCCACTTGACCTTGCTGCT 163485 ||||||| || ||||| |||||| Sbjct 176 ACTTCCCTCTAGACCTAGCTGCT 154 >seq695 Length=285002 Score = 161 bits (178), Expect = 1e-34 Identities = 322/471 (68%), Gaps = 7/471 (1%) Strand=Plus/Minus Query 162526 AATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCA 162585 ||||| | ||| || | ||||| | ||| || ||||||||| ||| | | ||| | Sbjct 41117 AATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGATCCCTACCTTATTGACCGCAACT 41058 Query 162586 ACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAA 162645 || || || || | || ||||| || | || | | ||||| |||||||| | ||| Sbjct 41057 TTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAA 40998 Query 162646 CCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGT 162705 ||| || | || || || || || || ||||| || || ||||||| | ||| || | Sbjct 40997 CCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACT 40938 Query 162706 TCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGG 162765 || | ||||||| | | ||| || | ||||||||||| ||| | ||||||| ||| Sbjct 40937 TCTGTAGTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG 40878 Query 162766 TTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCA 162825 | || ||||| || |||| | | | || || |||||| | | || | | Sbjct 40877 -TATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGT 40819 Query 162826 TACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTT 162885 ||| |||||| ||| ||||||| || || ||||||||| |||||||| | || Sbjct 40818 TACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATT 40759 Query 162886 GCATACTCTGCACCAGTATCTGCAGC-ATT--CGCTGTGTTCTTGGTCTATCCTTTCGGT 162942 ||||| || | || ||| |||||| | | |||| |||||| ||||||| ||||| Sbjct 40758 GCATATTCAACTCC--TAT-TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGT 40702 Query 162943 CAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAAC 162993 ||||| ||| ||||| | |||||| | || || |||| |||||| ||| Sbjct 40701 CAAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 111 bits (122), Expect = 2e-19 Identities = 242/359 (67%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 162860 TAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTG 162919 |||||||||| ||||||| ||||||||| || | || || | || || | ||| Sbjct 67787 TAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTG 67728 Query 162920 TGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT-CTGACGCAATGCCTCTTGGTATT 162978 | ||||| ||||||| ||| |||||| ||| | |||| | |||| || | || Sbjct 67727 TTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATC 67668 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 |||| |||||| || | |||| | || ||||| || || |||| || | |||||||| Sbjct 67667 TCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAACACA---TCTTTATGCACCCA 67611 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | | | || ||||||||| || || || | || |||||| | | Sbjct 67610 TTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGAT 67551 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 ||| | || || ||| | | ||||| |||| || | | || | || | ||| Sbjct 67550 TCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGT 67491 Query 163159 TATAAGTTCGGACAAGAAG-AAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216 || | ||| | ||||| | || | ||||| || || | ||||||||||| || |||| Sbjct 67490 TACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552549082062720