Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12078 134 3e-26 seq10024 131 3e-25 seq9751 105 1e-17 >seq12078 Length=35335 Score = 134 bits (148), Expect = 3e-26 Identities = 562/867 (65%), Gaps = 50/867 (6%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGAT--GTTC 47896 |||||| || || ||||| ||||| ||||| || || ||||| | |||||| || |||| Sbjct 4900 CTGGTACTCGCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAGTTC 4841 Query 47897 --TCCA-TGAAGAGGAAGGGGTTGGGTG--TGT-TATACACCCGTGTCAGGCCCATCTGT 47950 |||| | || ||||| ||| ||| ||| |||||| | | | | Sbjct 4840 CATCCAATCAA----AAGGGTTTGCAACATTGTATATTTTCCCGTGCC----CTAAAGCT 4789 Query 47951 TCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCT 48010 |||||| ||||||| ||| |||||||||| | ||| | | |||||| ||| Sbjct 4788 CCCAGCAACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCCGTTCATCCCT 4729 Query 48011 A-TGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCC 48069 | | | | ||| ||||| ||| | | |||||| |||| || | || || || | Sbjct 4728 ACTAACGCACA-GGGCAGAGCGTCGCACACAAACTCTCTCTCAATGTCAACAGCCTCTCT 4670 Query 48070 CACAATCTGCTTAACGCGGGACTCTGAG----GGTTTGTTGCGCAGGTGCTTGGCATAGA 48125 || ||| ||| ||||| |||| | | |||| || ||| | | | || | Sbjct 4669 TACTATCCCCTTCACGCG---CTCTTCGCTCAGCTTTGAC-CGGAGGAGATCG---TACA 4617 Query 48126 GCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGC 48185 ||| ||| ||||| || | ||| | |||||| || || ||| | | |||| ||||| Sbjct 4616 GCAAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGAAAG 4557 Query 48186 AGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGA 48245 | |||||||| | ||| | || ||| | ||| || || || |||| ||||||| Sbjct 4556 TTAATCCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGA 4497 Query 48246 AGAAGATGCCCTCCACTGCC-GCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 | ||||| ||||| | ||| || || || | | || ||| |||||| |||| Sbjct 4496 AAAAGATCCCCTCAA-TGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGT----TTCTCC 4442 Query 48305 TCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTAT 48363 | | |||||| | ||||| || ||||| || | ||| || | ||| || | Sbjct 4441 GCCGTTGATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAAC 4382 Query 48364 GGCCCGGAAGAGCTTCTTGC-ACTCACCTGCGTCCGCAACATAGGT---AGT---GAGCA 48416 ||| |||||||| || |||| | | || | | | | | | ||| ||| | Sbjct 4381 GGCACGGAAGAG------GCGACTCTTTTCC-TCGGAATCTTTGATGTAAGTCTCGAGGA 4329 Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476 || ||||||||| ||||| | ||| || || ||||||||||| |||||||| || | Sbjct 4328 GCAGACTGTACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCAC 4269 Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCC 48536 ||||| | | || || ||| | ||| | | ||||| ||| ||| || | Sbjct 4268 GCGCCTCGGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATAC 4209 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 |||| || || ||||| ||||| || || || | | ||| |||||||||| | ||||| Sbjct 4208 CATCAGAGGCTGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGA 4149 Query 48597 GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 ||| | |||| | | || || || ||||| || ||||||| ||||||| Sbjct 4148 GAGTTTCCCAGTGACGGAGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACG 4089 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATA 48683 | ||||| |||||||| |||||| Sbjct 4088 CTTCGGCTTTCTTGTACATTTCCCATA 4062 >seq10024 Length=53621 Score = 131 bits (144), Expect = 3e-25 Identities = 553/860 (64%), Gaps = 40/860 (5%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || ||||| ||||| ||||| || || ||||| | |||||| || || Sbjct 15286 CTGGTACTCACCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAGTTC 15227 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| | ||| ||||| || || | ||||| | | | | | ||| Sbjct 15226 CATCCAATCGAAAGGGTTTACAACATTGTAAATTTTCCCGTACC----CTAACGCTCCCA 15171 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-TG 48013 || ||||||| ||| |||||||||| | ||| | | |||| || |||| | Sbjct 15170 ACAACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCTGTTAATCCCTACTA 15111 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | | ||| ||| | ||| | | |||||| ||||||| | ||||| || | || Sbjct 15110 ACGCACA-GGGAAGAGCGTCGCACACAAACTCTCTCTCTATGTCAACGGCCTCTCTTACT 15052 Query 48074 ATCTGCTTAACGCGGGACTCTGAG----GGTTTGTTGCGCAGGTGCTTGGCATAGAGCAT 48129 ||| ||| ||||| |||| | | |||| || ||| | | | || |||| Sbjct 15051 ATCCCCTTCACGCG---CTCTTCGCTCAGCTTTGAC-CGGAGGAGATCG---TACAGCAA 14999 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||| || | ||| | |||||| || || ||| | | | |||||||| | Sbjct 14998 GCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTTAA 14939 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||| | ||| | || ||| | ||| || || || |||| |||||||| || Sbjct 14938 TCCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAA 14879 Query 48250 GATGCCCTCCACTGCC-GCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 || ||||| | ||| || || ||| | | || ||| |||||| |||| | | Sbjct 14878 TATCCCCTCAA-TGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGT----TTCTCCGCCG 14824 Query 48309 A-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 |||||| | ||||| || || || || | ||| |||| ||| || ||||| Sbjct 14823 TTGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCA 14764 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGT---GAGCAGCTTT 48421 |||||||| || || | | |||| | | | | | ||| ||| ||| Sbjct 14763 CGGAAGAGGCG---GCTCTT---TTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGA 14710 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | ||| || || ||||||||||| || ||||| || | ||| Sbjct 14709 CTGTACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCACGCGCC 14650 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || | | || || ||| | ||| | | ||||| ||| ||| || ||||| Sbjct 14649 TCGGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCG 14590 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA 48601 || |||||||| ||||| || || ||| | | ||| |||||||||| | |||||| | Sbjct 14589 GAGGCAGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTT 14530 Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 | |||| | | || || || ||||| || ||||||| || ||||| Sbjct 14529 TCCCAGTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCG 14470 Query 48662 GCTTTTTTGTACATGCCCCA 48681 ||||| |||||||| |||| Sbjct 14469 GCTTTCTTGTACATTTCCCA 14450 >seq9751 Length=50749 Score = 105 bits (116), Expect = 1e-17 Identities = 364/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || ||||| || || | | |||| ||||| Sbjct 49322 CAAGCAAGCGAAATCACAGTGGAGACCCTCGTCTCGCGATATTAACTCGTTTGAGAAAGT 49263 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | || | || ||| | |||||| || || |||| || ||||| Sbjct 49262 TAATCCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACTTCCGGAGAA 49203 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||||| ||||| || || || ||| | | || ||| |||||| |||| || Sbjct 49202 AAAGATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGT----TTCTCCTC 49147 Query 48307 TGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGG 48365 | |||||| | ||||| || ||||| || | || |||| ||| || |||| Sbjct 49146 CGTTGATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTCAATGG 49087 Query 48366 CCCGGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 | |||||||| |||| ||| | | |||| | ||||| | || Sbjct 49086 CGCGGAAGAGTCGGCTCTTT---TCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAGAC 49030 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||||||||||||||| | |||||| |||||||| ||||| |||||||| |||| |||| Sbjct 49029 TGTACATCTCAGAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGCCCGCGCCT 48970 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCT 48541 | | | || || ||| | | || | | || || || ||| ||| || || || Sbjct 48969 CGGAGATTTGGACCTCT-TTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCGTCG 48911 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA 48601 || || || || |||||||| ||||| | | ||| |||||||| | | |||||| | Sbjct 48910 GAGGCGGCGAAAAAGGCAAGAACATGAGTGATGAAGTGGCGCTCATCGGCGGTGAGTGTT 48851 Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 | |||| | | || ||| || || || || | ||||| || ||||| Sbjct 48850 TCCCAGTGACGGAGATCGGATGACAGATCGACCTCCTCGGCGGTCCAAAACGACGCTTCG 48791 Query 48662 GCTTTTTTGTACATGCCCCATA 48683 ||||| |||||||| |||||| Sbjct 48790 GCTTTCTTGTACATTTCCCATA 48769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930630517329920