Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9751 95.1 2e-14 >seq9751 Length=50749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 240/355 (68%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT 25748 ||||||||||||||| || || || || ||| | ||||||||| |||| ||| | Sbjct 48980 TTTCTACGGTTTCCAAATCGCTATTGAGAATATACACTCTGAGATGTACAGTCTCCTTTT 49039 Query 25749 GATGACGTACATTACAGACGTCGCCGAGAGAGATCGG-CTGTTTGGTGCCATCGAGCACA 25807 | ||| ||||| | ||| || || | ||| | | || || | ||||| || Sbjct 49040 GGAGACCTACATCAAGGACTCCGATGAAA-AGAGCCGACTCTTCCGCGCCATTGAAACGG 49098 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | || | | | ||||| |||||||||||| ||||||||| | || | | | Sbjct 49099 TGCCGTGTGTGGCTAAAAAGGCCGAGTGGGCCATGAAATGGATCAACGG--AG-GAGAAA 49155 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | || | ||||||| || | ||||||||| || ||||| ||||||||| ||| | Sbjct 49156 CTTTCGCCGAGCGGTTGATCGCCTTTGCTTGCGTCGAGGGGATCTTTTTCTCCGGAAGTT 49215 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAA 25985 | |||| |||| |||||| | || || || |||||||| | ||||| || || Sbjct 49216 TCTGCG-CCATATTCTGGTTGAAAAAGCGCGGTTTAATGCCCGGATTA-ACTTTCTCAAA 49273 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||| | || | ||||||||||||||| | ||||| || ||| || | ||| Sbjct 49274 CGAGTTAATATCGCGAGACGAGGGTCTCCACTGTGATTTCGCTTGCTTGTTGTAC 49328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927945120926720