Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq5102 228 2e-55 seq695 170 6e-38 seq3550 156 1e-33 seq31365 152 2e-32 seq3386 122 3e-23 >seq5102 Length=101622 Score = 228 bits (252), Expect = 2e-55 Identities = 293/404 (73%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 18414 ACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCC 18473 || || || ||||| |||||| ||||| ||||||||||| || | ||||||||||| Sbjct 51934 ACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 51993 Query 18474 CATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATAT 18533 || | || ||||||||| || | || | | ||||| || ||||| | | ||| Sbjct 51994 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAA 52053 Query 18534 GGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 18593 || || || || |||||||| || || | || ||| ||||||||||| ||||| ||||| Sbjct 52054 GGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 52113 Query 18594 AGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGT 18653 | ||| || || ||| | || | || || || || || || |||||||| || ||| Sbjct 52114 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGT 52173 Query 18654 AAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAAT 18713 | | ||| || ||||| |||||||||||||| || || || ||||||||||||| || Sbjct 52174 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 52233 Query 18714 GCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCAC 18773 || || | |||| | | || |||||| || | | ||||||||| | || |||||||| Sbjct 52234 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCAT 52293 Query 18774 CCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | ||| || ||||| | || || || | ||||| ||| || Sbjct 52294 CCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq695 Length=285002 Score = 170 bits (188), Expect = 6e-38 Identities = 318/460 (69%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 18315 AACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 18374 |||||| ||||||||| | || || | ||||||||||||||| ||| ||||||| Sbjct 40646 AACATG---TTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGA 40702 Query 18375 CCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAA 18432 || | ||||| | | ||||| || | || || |||||| | || | ||||| |||| Sbjct 40703 CCGATTGGATAGATCAAGAAA-ACAGTAGTAGT-AGCTGCAATAGGAGTTGAATATGCAA 40760 Query 18433 CACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAG 18492 | |||||| ||| |||||||||| ||||||||||| | | || || |||||| Sbjct 40761 TAGCAATCCAAGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAAC 40820 Query 18493 CTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 18552 || | || | | ||||| || ||||| | | ||| || || || || |||| || Sbjct 40821 AAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CC 40879 Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612 | || || | || ||| ||||||||||| |||| ||| | | ||| || | ||| | Sbjct 40880 ATTCATCAACGGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAG 40939 Query 18613 ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT 18672 | | || | || || || || |||||||| || |||| | ||| || | ||| | Sbjct 40940 TAAGAATAATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTT 40999 Query 18673 CACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAG 18732 ||||||||||||| || || | || ||||||||| ||| | || | |||| || Sbjct 41000 CACGAATACCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAG 41059 Query 18733 CTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCA 18772 |||||| || | | ||||||||| | || ||||||| Sbjct 41060 TTGCGGTCAATAAGGTAGGGATCATTAAAACAACAAACCA 41099 >seq3550 Length=137586 Score = 156 bits (172), Expect = 1e-33 Identities = 227/318 (71%), Gaps = 7/318 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||| ||| | || ||||||||||| | |||| ||| Sbjct 92888 AGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTT 92947 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| ||| | | ||||||| ||| | || | ||| | | | |||||| Sbjct 92948 AGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAA- 93005 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||| || ||||| ||||| || || |||| ||| ||| || || | || || Sbjct 93006 --ATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 93063 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | |||||| ||||||| ||||||||||||| | | |||||| Sbjct 93064 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 93123 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || ||||||||| | ||||| | || ||||| || |||||||| || || |||||||| Sbjct 93124 GAAACTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 93183 Query 18131 CGTCTCTTCTTCTTGGCC 18148 || ||||| ||||| || Sbjct 93184 AGTTTCTTCCTCTTGACC 93201 >seq31365 Length=1132 Score = 152 bits (168), Expect = 2e-32 Identities = 226/318 (71%), Gaps = 7/318 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||| ||| | || ||||||||||| | |||| ||| Sbjct 157 AGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTT 216 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| ||| | | ||||||| ||| | || | ||| | | | |||||| Sbjct 217 AGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAA- 274 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||| || ||||| ||||| || || |||| ||| ||| || || | || || Sbjct 275 --ATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGT 332 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | |||||| ||||||| ||||||||||||| | | |||||| Sbjct 333 GAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 392 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || ||||||||| | ||||| | || |||| || |||||||| || || |||||||| Sbjct 393 GAAACTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATA 452 Query 18131 CGTCTCTTCTTCTTGGCC 18148 || ||||| ||||| || Sbjct 453 AGTTTCTTCCTCTTGACC 470 >seq3386 Length=136654 Score = 122 bits (134), Expect = 3e-23 Identities = 279/421 (66%), Gaps = 23/421 (5%) Strand=Plus/Plus Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 ||| || || || ||||||| ||| |||||| || |||||||| | |||||||||||| Sbjct 67602 CATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAG-AGAAACTCCCTTGTCCAAAAGGATAAA 18387 |||| | || | || |||||||||||| | ||||| ||||| | | ||||| | Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718 Query 18388 CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGC 18447 | || || | | |||||||| || || | ||||| |||||| ||||| || Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGC 67778 Query 18448 GCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGA 18507 |||||||||| | | || ||||| ||| || | || | | Sbjct 67779 GCATACCTAGACCA------------------CGACCCATATAACAAGCTACACCAAGTA 67820 Query 18508 GAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTG 18567 ||||| || ||||| | | ||| | || || || ||||||| ||||| | || || Sbjct 67821 AGAAGTGTAAAACAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATG 67880 Query 18568 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCC 18627 | ||| |||| ||||| || || | ||| || || ||| | | | | || || | Sbjct 67881 TCGATTCTAAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCAC 67940 Query 18628 CTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTA 18687 | | || ||| ||||||| || |||| | || | ||||| |||||||||||||| | Sbjct 67941 CAAAAATAATG-TGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCAA 67999 Query 18688 T 18688 | Sbjct 68000 T 68000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151179161347872