Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq3550 203 9e-48
seq31365 197 4e-46
seq5102 178 4e-40
seq695 138 3e-28
seq3386 86.0 2e-12
>seq3550
Length=137586
Score = 203 bits (224), Expect = 9e-48
Identities = 234/314 (75%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || | |||||||| || || | |||| |||
Sbjct 92889 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 92948
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
||| |||||| ||| ||||||| ||| || || || | || | | | | | | | ||
Sbjct 92949 GCATGGTTAATAATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAAT 93007
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
|||||||| ||||||||||| | |||||||| |||||| | || | |||| |||
Sbjct 93008 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 93067
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
|| |||||||| || ||| | ||||| | |||||||| | | ||| ||||| || ||
Sbjct 93068 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 93127
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
|||||||| | ||||| | || |||||||| || |||||||| || ||||| |||||
Sbjct 93128 CTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 93187
Query 21771 TCTTCCTCTTGACC 21784
||||||||||||||
Sbjct 93188 TCTTCCTCTTGACC 93201
>seq31365
Length=1132
Score = 197 bits (218), Expect = 4e-46
Identities = 233/314 (74%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || | |||||||| || || | |||| |||
Sbjct 158 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 217
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
||| |||||| ||| ||||||| ||| || || || | || | | | | | | | ||
Sbjct 218 GCATGGTTAATAATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAAT 276
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
|||||||| ||||||||||| | |||||||| |||||| | || | |||| |||
Sbjct 277 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 336
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
|| |||||||| || ||| | ||||| | |||||||| | | ||| ||||| || ||
Sbjct 337 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 396
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
|||||||| | ||||| | || ||||||| || |||||||| || ||||| |||||
Sbjct 397 CTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAGTT 456
Query 21771 TCTTCCTCTTGACC 21784
||||||||||||||
Sbjct 457 TCTTCCTCTTGACC 470
>seq5102
Length=101622
Score = 178 bits (196), Expect = 4e-40
Identities = 284/405 (70%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 22050 ACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCC 22109
|||||||| || || |||||| |||||| || | ||| || || || | |||||||||
Sbjct 51934 ACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 51993
Query 22110 CACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAAT 22169
||||| || ||||||||| | || |||| | |||||| || || | | | |
Sbjct 51994 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAA 52053
Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229
|||||||| ||||| | ||||||||||| | || |||||||| || ||||| |||||
Sbjct 52054 GGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 52113
Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289
| || || || | | |||| | ||| || || || || ||||| || || |
Sbjct 52114 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGT 52173
Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349
|| || |||| || ||||| || || ||||| || || || || || || ||| |||
Sbjct 52174 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 52233
Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408
||||||||||| || || |||| ||| ||| | || ||||| | || || |||||
Sbjct 52234 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCA 52292
Query 22409 TCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
||| | ||||||||||| | ||| ||| | |||| ||| ||
Sbjct 52293 TCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337
>seq695
Length=285002
Score = 138 bits (152), Expect = 3e-28
Identities = 319/475 (67%), Gaps = 7/475 (1%)
Strand=Plus/Plus
Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGG 22018
|||||| || | || || || || |||||| ||||||||||| || || || | ||
Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710
Query 22019 ATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCA 22078
||| | | ||| |||| ||| | ||| || | ||||| || || |||| | |||||
Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCA 40770
Query 22079 GGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCC 22138
|| ||| ||||| | | ||||||||| |||| || || |||||| | || ||
Sbjct 40771 AGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACC 40830
Query 22139 AATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAG 22198
|| | |||||| || || | | | | |||||||| ||||| | |||||||||||
Sbjct 40831 AAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCAAC 40889
Query 22199 TGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG--CTCGGAACG 22256
| || |||||||| || |||| ||| | | || || | ||| | | |||
Sbjct 40890 GGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAAT--AACTACAGAAGTAAGAATA 40947
Query 22257 ACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATT 22316
| | | || || || || ||||| || || | || || |||| | ||||| || ||
Sbjct 40948 ATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATA 41007
Query 22317 CCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-C 22375
||||| || || | | | || ||| |||| |||||||||| || || |||| |
Sbjct 41008 CCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTC 41067
Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTA 22430
|| ||| | || ||||| | || | ||||||| | ||||||||| || |||
Sbjct 41068 AATAAGGTA-GGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTTA 41121
>seq3386
Length=136654
Score = 86.0 bits (94), Expect = 2e-12
Identities = 125/175 (71%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 21905 CATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAA 21964
||||||||| || ||||||| || ||| ||||||||||| || | |||| | |||||
Sbjct 67602 CATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658
Query 21965 GGTGCCGGATATCCCCAAGGGCATAGCATCAG-AAAAAGAGCCCTGTCCAAACGGATAAA 22023
|| | || || | | | ||||| |||||| ||||| || || | | ||||| |
Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718
Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCA 22078
| ||| |||| || ||||| || ||||||| || || |||||| ||||||
Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCA 67773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146073463784640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |