Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3550 203 9e-48 seq31365 197 4e-46 seq5102 178 4e-40 seq695 138 3e-28 seq3386 86.0 2e-12 >seq3550 Length=137586 Score = 203 bits (224), Expect = 9e-48 Identities = 234/314 (75%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || | |||||||| || || | |||| ||| Sbjct 92889 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 92948 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||| |||||| ||| ||||||| ||| || || || | || | | | | | | | || Sbjct 92949 GCATGGTTAATAATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAAT 93007 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 |||||||| ||||||||||| | |||||||| |||||| | || | |||| ||| Sbjct 93008 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 93067 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| || ||| | ||||| | |||||||| | | ||| ||||| || || Sbjct 93068 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 93127 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 |||||||| | ||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 93128 CTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 93187 Query 21771 TCTTCCTCTTGACC 21784 |||||||||||||| Sbjct 93188 TCTTCCTCTTGACC 93201 >seq31365 Length=1132 Score = 197 bits (218), Expect = 4e-46 Identities = 233/314 (74%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || | |||||||| || || | |||| ||| Sbjct 158 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 217 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||| |||||| ||| ||||||| ||| || || || | || | | | | | | | || Sbjct 218 GCATGGTTAATAATATCAGCCC-GGTATTAATTACACGACCTTGACTATCAACTACAAAT 276 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 |||||||| ||||||||||| | |||||||| |||||| | || | |||| ||| Sbjct 277 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 336 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| || ||| | ||||| | |||||||| | | ||| ||||| || || Sbjct 337 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 396 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 |||||||| | ||||| | || ||||||| || |||||||| || ||||| ||||| Sbjct 397 CTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAGTT 456 Query 21771 TCTTCCTCTTGACC 21784 |||||||||||||| Sbjct 457 TCTTCCTCTTGACC 470 >seq5102 Length=101622 Score = 178 bits (196), Expect = 4e-40 Identities = 284/405 (70%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 22050 ACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCC 22109 |||||||| || || |||||| |||||| || | ||| || || || | ||||||||| Sbjct 51934 ACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 51993 Query 22110 CACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAAT 22169 ||||| || ||||||||| | || |||| | |||||| || || | | | | Sbjct 51994 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAA 52053 Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 |||||||| ||||| | ||||||||||| | || |||||||| || ||||| ||||| Sbjct 52054 GGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 52113 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | |||| | ||| || || || || ||||| || || | Sbjct 52114 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGT 52173 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || |||| || ||||| || || ||||| || || || || || || ||| ||| Sbjct 52174 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 52233 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 ||||||||||| || || |||| ||| ||| | || ||||| | || || ||||| Sbjct 52234 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCA 52292 Query 22409 TCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||| | ||||||||||| | ||| ||| | |||| ||| || Sbjct 52293 TCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq695 Length=285002 Score = 138 bits (152), Expect = 3e-28 Identities = 319/475 (67%), Gaps = 7/475 (1%) Strand=Plus/Plus Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGG 22018 |||||| || | || || || || |||||| ||||||||||| || || || | || Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 22019 ATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCA 22078 ||| | | ||| |||| ||| | ||| || | ||||| || || |||| | ||||| Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCA 40770 Query 22079 GGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCC 22138 || ||| ||||| | | ||||||||| |||| || || |||||| | || || Sbjct 40771 AGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACC 40830 Query 22139 AATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAG 22198 || | |||||| || || | | | | |||||||| ||||| | ||||||||||| Sbjct 40831 AAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCAAC 40889 Query 22199 TGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG--CTCGGAACG 22256 | || |||||||| || |||| ||| | | || || | ||| | | ||| Sbjct 40890 GGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAAT--AACTACAGAAGTAAGAATA 40947 Query 22257 ACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATT 22316 | | | || || || || ||||| || || | || || |||| | ||||| || || Sbjct 40948 ATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATA 41007 Query 22317 CCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-C 22375 ||||| || || | | | || ||| |||| |||||||||| || || |||| | Sbjct 41008 CCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTC 41067 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTA 22430 || ||| | || ||||| | || | ||||||| | ||||||||| || ||| Sbjct 41068 AATAAGGTA-GGGATCATTAAAACAACAAACCATCTGATATAAAGACGATTTTTA 41121 >seq3386 Length=136654 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 21905 CATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAA 21964 ||||||||| || ||||||| || ||| ||||||||||| || | |||| | ||||| Sbjct 67602 CATGTGAAATGGGTGCATAAAGAT---GTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658 Query 21965 GGTGCCGGATATCCCCAAGGGCATAGCATCAG-AAAAAGAGCCCTGTCCAAACGGATAAA 22023 || | || || | | | ||||| |||||| ||||| || || | | ||||| | Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718 Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCA 22078 | ||| |||| || ||||| || ||||||| || || |||||| |||||| Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCA 67773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146073463784640