Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq5102 185 1e-41 seq3550 174 2e-38 seq31365 168 8e-37 seq695 145 9e-30 seq3386 141 1e-28 >seq5102 Length=101622 Score = 185 bits (204), Expect = 1e-41 Identities = 278/395 (70%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 8470 ACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCC 8529 || ||||| |||||| ||| |||||| || | |||||| | ||| | | ||| Sbjct 51934 ACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 51993 Query 8530 CACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATAT 8589 |||| | |||||||||| || | |||| | |||||| || | || |||| ||| Sbjct 51994 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAA 52053 Query 8590 GGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGT 8649 ||||| || || || ||||| ||||| | | || |||||||| || || || ||||| Sbjct 52054 GGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 52113 Query 8650 AATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATG 8709 || || ||||| |||| |||| | |||||||| || || |||||||| || | Sbjct 52114 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGT 52173 Query 8710 AATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAAT 8769 | || || | |||||||||||||||||| || ||||| || || ||||||||||| || Sbjct 52174 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 52233 Query 8770 GCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAA 8829 || | ||||| || || || | || ||| ||| ||||| | ||| |||||||| Sbjct 52234 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCAT 52293 Query 8830 CCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 |||| ||||| | ||| | || || || | ||| Sbjct 52294 CCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 52328 >seq3550 Length=137586 Score = 174 bits (192), Expect = 2e-38 Identities = 232/316 (73%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || || || ||||||||||||||||||||| ||||| Sbjct 92889 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 92948 Query 7951 GCTCTGTTTAATACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || || |||||| ||| ||| ||| ||| | ||| | | |||||| || | Sbjct 92949 GCA-TGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAA 93006 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 ||||||||| || || || || ||||| || | ||| |||| |||||| | || ||| || Sbjct 93007 TTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAA 93066 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||| | || ||| || || | | ||| | |||||| || | | | | ||||| || Sbjct 93067 CCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 93126 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | |||||| | ||||| |||| ||||| || ||||||||||| || |||||||| | Sbjct 93127 ACTA-GCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAG 93185 Query 8189 TCTCTTCTTCTTGACC 8204 | ||||| |||||||| Sbjct 93186 TTTCTTCCTCTTGACC 93201 >seq31365 Length=1132 Score = 168 bits (186), Expect = 8e-37 Identities = 231/316 (73%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || || || ||||||||||||||||||||| ||||| Sbjct 158 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 217 Query 7951 GCTCTGTTTAATACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || || |||||| ||| ||| ||| ||| | ||| | | |||||| || | Sbjct 218 GCA-TGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAA 275 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 ||||||||| || || || || ||||| || | ||| |||| |||||| | || ||| || Sbjct 276 TTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAA 335 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||| | || ||| || || | | ||| | |||||| || | | | | ||||| || Sbjct 336 CCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 395 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | |||||| | ||||| |||| |||| || ||||||||||| || |||||||| | Sbjct 396 ACTA-GCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAG 454 Query 8189 TCTCTTCTTCTTGACC 8204 | ||||| |||||||| Sbjct 455 TTTCTTCCTCTTGACC 470 >seq695 Length=285002 Score = 145 bits (160), Expect = 9e-30 Identities = 310/462 (67%), Gaps = 1/462 (0%) Strand=Plus/Plus Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || ||| |||| || |||| |||||| |||||||| || || ||||| | ||| Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 ||| | ||||| || | || ||| | | |||| |||||| | | ||||| Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCAATAGGAGTTGAATATGCAATAGCAATCCA 40770 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 || |||||||| || | | ||| ||| | ||| |||||| || | || Sbjct 40771 AGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACACC 40830 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | |||||| || | || |||| ||| ||||| || || || | ||| ||||| | Sbjct 40831 AAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCAAC 40889 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | || |||||||| || | || ||| | || |||||| | |||| ||| | Sbjct 40890 GGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAATAAT 40949 Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738 ||||||| || || |||||||| || | | || || | || ||||||||||||||| Sbjct 40950 GACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAATACC 41009 Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAA 8798 || ||||| | | ||||||||||||| | | ||||| || || || | || Sbjct 41010 ATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGTCAA 41069 Query 8799 CAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 ||| ||| ||||||| ||| ||||||| | || |||||| Sbjct 41070 TAAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAG 41111 >seq3386 Length=136654 Score = 141 bits (156), Expect = 1e-28 Identities = 390/594 (66%), Gaps = 28/594 (5%) Strand=Plus/Plus Query 8156 CAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTT-CTTCTTGACCAAACTTATAA 8214 |||| || ||||||||||| | |||||||| || | || | ||||||| || | ||| Sbjct 67432 CAAAATAACCATGAGCAGCTATGATATTATAAGTTTTTTCCCTCTTGACTGAATCTGTAA 67491 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA 8274 || | || | | || | || || || | ||||| | | ||| || || |||||| Sbjct 67492 CCTTCATTAATAAATTCATTTTTTGTGGTTTTCCTGATCAAACTAGAGGTTACCAAAGAA 67551 Query 8275 CCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA 8334 | |||||| || |||| || || |||| | || |||| | | ||| || || Sbjct 67552 TCATGCATAACATTGAATAGGGAGTTGTCGAATACACTAGCTATGCTTAACATGTGAAAT 67611 Query 8335 GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAA 8394 || ||||||| ||| || || || |||||||| | |||||| || || ||| |||| Sbjct 67612 GGGTGCATAAAGATG---TGTTCAGCCTGGAATACAACCATGAAATTGAAAGTAACAGAG 67668 Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGAA---CCCTGACCAAATGGATATACTAAGAAC 8451 || | ||| |||| |||||||| || || || ||| | | |||||| | |||||| Sbjct 67669 ATTCTTAGGAGCATACCATCAGAAAA--AACTTCCTTGATCGATTGGATAGATTAAGAAA 67726 Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCT 8511 || | | |||||| | || |||| |||||| ||| |||||| | ||||||| Sbjct 67727 ACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGCGCATACCT 67786 Query 8512 AAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGG 8571 | || ||| | |||||| ||| || | |||| | |||||| Sbjct 67787 A--------GA------CCA----CGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 67828 Query 8572 AAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCC 8631 || | || |||| ||| |||| || || | ||||| || || | | | | ||| Sbjct 67829 AAAACAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATGTCGATTCT 67888 Query 8632 CAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATG 8691 | || || || || || || |||||||| |||| ||| | |||||| | || Sbjct 67889 AAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCACCAAAAATA 67948 Query 8692 ATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATA 8745 ||| ||||||| || | | || | |||||||||||||||||| || ||| Sbjct 67949 ATG-TGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCAATA 68001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615265875679360