Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3550 203 9e-48 seq31365 197 4e-46 seq5102 178 4e-40 seq695 138 3e-28 seq3386 86.0 2e-12 >seq3550 Length=137586 Score = 203 bits (224), Expect = 9e-48 Identities = 234/314 (75%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 41903 GGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATC 41962 |||||||||||||| ||||| ||||| || |||||||| || |||||||| || | ||| Sbjct 93201 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 93142 Query 41963 TTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCT 42022 || | |||||||| || || ||||| ||| | | |||||||| | ||||| | ||| Sbjct 93141 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 93082 Query 42023 GTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGT 42082 || |||||||| ||||| |||| | || | |||||| |||||||| | |||||| Sbjct 93081 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 93022 Query 42083 TTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGAC 42142 ||||| |||||||||| | | | | | | | || | || || || ||| ||||||| Sbjct 93021 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTGAT 92963 Query 42143 ATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTC 42202 ||| |||||| ||| ||| |||| | || || |||||||| | || || || |||||| Sbjct 92962 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 92903 Query 42203 CCGCTTGACCTTGC 42216 || || ||||| || Sbjct 92902 CCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 197 bits (218), Expect = 4e-46 Identities = 233/314 (74%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 41903 GGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATC 41962 |||||||||||||| ||||| ||||| || |||||||| || ||||||| || | ||| Sbjct 470 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGATC 411 Query 41963 TTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCT 42022 || | |||||||| || || ||||| ||| | | |||||||| | ||||| | ||| Sbjct 410 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 351 Query 42023 GTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGT 42082 || |||||||| ||||| |||| | || | |||||| |||||||| | |||||| Sbjct 350 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 291 Query 42083 TTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGAC 42142 ||||| |||||||||| | | | | | | | || | || || || ||| ||||||| Sbjct 290 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTGAT 232 Query 42143 ATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTC 42202 ||| |||||| ||| ||| |||| | || || |||||||| | || || || |||||| Sbjct 231 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 172 Query 42203 CCGCTTGACCTTGC 42216 || || ||||| || Sbjct 171 CCTCTAGACCTAGC 158 >seq5102 Length=101622 Score = 178 bits (196), Expect = 4e-40 Identities = 284/405 (70%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 52337 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 52278 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || || |||||||||||||| ||| || || Sbjct 52277 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 52219 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | || || ||||| Sbjct 52218 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 52159 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | || || || | ||||| ||||| || Sbjct 52158 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 52099 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| || | ||||||||||| | ||||| |||||||| | | | | || Sbjct 52098 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGT 52039 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 || |||||| | |||| || | ||||||||| || |||||||||||||| | || Sbjct 52038 TTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 51979 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGT 41637 || || ||| | || |||||| |||||| || || |||||||| Sbjct 51978 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGT 51934 >seq695 Length=285002 Score = 138 bits (152), Expect = 3e-28 Identities = 319/475 (67%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 41257 TAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCG 41315 ||| || ||||||||| | ||||||| | || | ||||| || | ||| ||| ||| Sbjct 41121 TAAAAATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGATCCC-TACCTTATTGACCG 41063 Query 41316 CTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCC 41375 | || || |||||||||| |||| ||| || | | | || || ||||| || | Sbjct 41062 CAACTTTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTC 41003 Query 41376 GAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTC 41435 | ||||| | |||| || || | || || ||||| || || || || | | | ||| Sbjct 41002 GTGAACCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTC 40943 Query 41436 CGAG--CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 | | ||| | || || | | ||| |||| || |||||||| || | |||| Sbjct 40942 TTACTTCTGTAGTT--ATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGA 40885 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| | ||||| |||||||| | | | | || || |||||| | |||| || Sbjct 40884 TGAATGG-TATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGT 40826 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | |||||| || || |||| ||||||||| | | ||||| ||| || ||||| Sbjct 40825 AGCTTGTTACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGAT 40766 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 | |||| || || ||||| | || ||| | ||| |||| ||| | | ||||| | Sbjct 40765 TGCTATTGCATATTCAACTCCTATTGCAGCTACTACTACTGTTTTCTTGATCTATCCAAT 40706 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAAC 41728 || || || ||||||||||| |||||| || || || || | || |||||| Sbjct 40705 CGGTCAAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 41609 TGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTAT 41668 |||||| |||||| || || ||||||| || ||||| || |||| ||| | | ||| Sbjct 67773 TGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTGTTTTCTTAATCTAT 67714 Query 41669 CCGTTTGGACAGGGCTCTTTTT-CTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAA 41727 || | | || || ||||| |||||| ||||| | | | || || | || ||||| Sbjct 67713 CCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATCTCTGTTACTTTCAA 67654 Query 41728 CTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATG 41782 | |||| | || ||||||||||| ||| || ||||||| || ||||||||| Sbjct 67653 TTTCATGGTTGTATTCCAGGCTGAACAC---ATCTTTATGCACCCATTTCACATG 67602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146079857895552