Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq5102 224 3e-54 seq3550 183 9e-42 seq31365 178 4e-40 seq695 165 2e-36 seq3386 132 1e-26 >seq5102 Length=101622 Score = 224 bits (248), Expect = 3e-54 Identities = 302/415 (73%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| | || |||||| Sbjct 52346 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTT 52287 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 52286 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 52229 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 52228 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 52169 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || ||||||||| | | |||| | || || || | || | Sbjct 52168 ACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACT 52109 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || ||||||||||||| || |||| |||||| | ||||||||||| |||||| Sbjct 52108 TTTACCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATG 52049 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 || | | || || |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 52048 AGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAC 51989 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGT 42692 || | ||| || || ||| | || |||||| |||||| || || || ||||| Sbjct 51988 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGT 51934 >seq3550 Length=137586 Score = 183 bits (202), Expect = 9e-42 Identities = 233/317 (74%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 42956 TCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTA 43015 ||||||||||||| || |||||||| || || || || |||||||| ||||| || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 43016 TCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGG 43074 |||| | ||||| | |||| || ||| ||| ||||| || ||||| | || |||| | Sbjct 93143 TCTTTCGGTATGC-TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAG 93085 Query 43075 CCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAAT 43134 ||||| || || || ||||||||| || | || | || || ||| | || ||| | ||| Sbjct 93084 CCCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAAT 93025 Query 43135 GGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCT 43194 ||||| || |||||||||| | ||||||| ||| || ||| || ||| ||||| Sbjct 93024 GGTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCT 92966 Query 43195 GATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAAC 43254 |||||| | || | ||| ||| |||| | || || ||||| || | || || |||||| Sbjct 92965 GATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAAC 92906 Query 43255 TTCCCGCTTGATCTTGC 43271 ||||| || || || || Sbjct 92905 TTCCCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 178 bits (196), Expect = 4e-40 Identities = 232/317 (73%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 42956 TCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTA 43015 ||||||||||||| || |||||||| || || || || |||||||| |||| || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 43016 TCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGG 43074 |||| | ||||| | |||| || ||| ||| ||||| || ||||| | || |||| | Sbjct 412 TCTTTCGGTATGC-TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAG 354 Query 43075 CCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAAT 43134 ||||| || || || ||||||||| || | || | || || ||| | || ||| | ||| Sbjct 353 CCCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAAT 294 Query 43135 GGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCT 43194 ||||| || |||||||||| | ||||||| ||| || ||| || ||| ||||| Sbjct 293 GGTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCT 235 Query 43195 GATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAAC 43254 |||||| | || | ||| ||| |||| | || || ||||| || | || || |||||| Sbjct 234 GATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAAC 175 Query 43255 TTCCCGCTTGATCTTGC 43271 ||||| || || || || Sbjct 174 TTCCCTCTAGACCTAGC 158 >seq695 Length=285002 Score = 165 bits (182), Expect = 2e-36 Identities = 325/475 (68%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 42312 TAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTG 42370 ||| || ||||||||| | | ||||||| ||| | ||||| |||| || | | | | Sbjct 41121 TAAAAATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGAT-CCCTACCTTATTGACCG 41063 Query 42371 CTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTC 42430 | || | |||||| ||| || |||||||| | || |||| |||||||| |||| Sbjct 41062 CAACTTTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTC 41003 Query 42431 GTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGC 42490 |||||||| | ||||| ||||| || || || ||||| || || ||||||| | | | | Sbjct 41002 GTGAACCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTC 40943 Query 42491 CTA--GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 || | ||| | ||||| | | || || |||||||||||| || |||| Sbjct 40942 TTACTTCTGTA--GTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGA 40885 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 |||||| | ||||||||||| |||||| || | | || || |||||| | | ||| | Sbjct 40884 TGAATGG-TATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGT 40826 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 | |||| | || || || | ||||||| | || || || ||| || ||||| Sbjct 40825 AGCTTGTTACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGAT 40766 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 | |||| || || | ||| | || || | ||| | || ||| | |||||||| | Sbjct 40765 TGCTATTGCATATTCAACTCCTATTGCAGCTACTACTACTGTTTTCTTGATCTATCCAAT 40706 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAAC 42783 || ||||| |||||| ||||| |||||| | || || || | ||| |||||| Sbjct 40705 CGGTCAAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 132 bits (146), Expect = 1e-26 Identities = 384/591 (65%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 42418 ATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCT 42477 |||||||| |||||||||||||| | | | ||||| || || || |||| ||| || | | Sbjct 68000 ATTGATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTACGGAAACA-CATTATTTTT 67942 Query 42478 GGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCC 42537 |||||| | | | | | || ||||| | ||||| || |||||| ||| | Sbjct 67941 GGTGCCATTATTCTGACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTTAGAATCG 67882 Query 42538 AATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTC 42597 | || ||||||||||| | | ||||||||| | |||| || | | || || |||||| Sbjct 67881 ACATCCGTTGACGAATGGTTATGCAATGGCGGTCTTTATGAGTTAATTGTTTTACACTTC 67822 Query 42598 CTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATG 42657 | | ||| | | ||| |||| || | | || || ||| Sbjct 67821 TTACTTGGTGTAGCTTGTTATATGGGTCGTG------------------GTCTAGGTATG 67780 Query 42658 AGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTT 42717 | |||||| |||||| || || | ||||| || || || || | || ||| | Sbjct 67779 CGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTGTTTTCTTA 67720 Query 42718 GTCTATCCATTTGGGCAAGGTTCTTTTT-CAGATGGAATGCCTCTTGGCATTTCCGGTAC 42776 |||||||| | | ||||| ||||| | ||||| |||| || | || || | ||| Sbjct 67719 ATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATCTCTGTTAC 67660 Query 42777 GTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATAT 42836 ||||| |||||| | || ||||||||||||| |||| ||||||| || || || || Sbjct 67659 TTTCAATTTCATGGTTGTATTCCAGGCTGAAC---ACATCTTTATGCACCCATTTCACAT 67603 Query 42837 GCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGT 42896 | | | | || | ||||| | || | ||| | |||||||| | | | || Sbjct 67602 GTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGATTCTTTGGT 67543 Query 42897 CACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTT 42956 |||||| | | | | |||| || |||| ||| ||| | || |||| || Sbjct 67542 AACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGTTACAGATT 67483 Query 42957 CGGTCAAGA-GGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTG 43006 | ||||||| ||| | |||||||| || | || || |||||||| |||| Sbjct 67482 CAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143400725423424