Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq5102 185 3e-42 seq3550 179 1e-40 seq31365 176 1e-39 seq695 136 1e-27 >seq5102 Length=101622 Score = 185 bits (204), Expect = 3e-42 Identities = 286/403 (71%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | | || ||||||||| Sbjct 51937 GGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCAC 51996 Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578 | | || || ||||| || | ||||||||| || | ||| | | ||| || Sbjct 51997 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGA 52056 Query 26579 CCGCCATTGTATAGCCACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAG 26637 ||||||||||||| ||| || || | | |||| |||||||||||||||||||| || | Sbjct 52057 CCGCCATTGTATAACCATTCATCAACGGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAA 52115 Query 26638 TCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAA 26697 || || || ||| | || | | || || || || |||||||||||||| | || Sbjct 52116 ACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAG 52175 Query 26698 CGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGC 26757 || || ||||| || ||||| || ||||| |||||||| || || || || |||||||| Sbjct 52176 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGC 52235 Query 26758 AAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATC 26816 | ||||| ||| | ||| || | | |||| || ||||| | || || ||||||| Sbjct 52236 GATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATC 52294 Query 26817 CCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 | | || |||||||| ||||| || || | ||| | ||| || Sbjct 52295 CGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq3550 Length=137586 Score = 179 bits (198), Expect = 1e-40 Identities = 229/314 (73%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||| ||| | || ||||||||||| | || | |||| Sbjct 92889 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 92948 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || |||| | | |||||||| ||| |||| || | | ||| ||||| | Sbjct 92949 GCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAAT 93007 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || |||||||||||||| || | ||| |||| ||||| | || || | | Sbjct 93008 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 93067 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||| ||| ||| | |||||||| | |||||| || || ||| Sbjct 93068 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 93127 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || |||||| |||| || |||| ||||| || || || ||||| || |||||||| || Sbjct 93128 CTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 93187 Query 26177 TCTTCATCTTGCCC 26190 ||||| ||||| || Sbjct 93188 TCTTCCTCTTGACC 93201 >seq31365 Length=1132 Score = 176 bits (194), Expect = 1e-39 Identities = 228/314 (73%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||| ||| | || ||||||||||| | || | |||| Sbjct 158 GCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAAGTTA 217 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || |||| | | |||||||| ||| |||| || | | ||| ||||| | Sbjct 218 GCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTACAAAT 276 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || |||||||||||||| || | ||| |||| ||||| | || || | | Sbjct 277 TGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAGTGAAC 336 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||| ||| ||| | |||||||| | |||||| || || ||| Sbjct 337 CAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 396 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || |||||| |||| || |||| |||| || || || ||||| || |||||||| || Sbjct 397 CTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTATAAGTT 456 Query 26177 TCTTCATCTTGCCC 26190 ||||| ||||| || Sbjct 457 TCTTCCTCTTGACC 470 >seq695 Length=285002 Score = 136 bits (150), Expect = 1e-27 Identities = 322/474 (68%), Gaps = 13/474 (3%) Strand=Plus/Plus Query 26365 GTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGG 26424 ||| |||||| ||||||| || | |||||| |||||| |||| ||||||| |||| || Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 26425 ATAAACTAAGAACACTGCG--AG-AGCTGCGGATAGTGGTGCTGTATATGCAACAAATAT 26481 ||| | ||||| || | || |||||| |||| || || |||||||| | || Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCA-ATAGGAGT--TGAATATGCAATAGCAAT 40767 Query 26482 CCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTAC 26541 ||| || ||| ||||| | || |||||| ||| | ||| || ||||| Sbjct 40768 CCAAGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTAC 40827 Query 26542 TCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTC 26601 || | ||||||||| || | ||| | | ||| || ||||||||||||| ||| || || Sbjct 40828 ACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATC 40886 Query 26602 CA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG-GGG 26659 | | |||| |||||||||||| ||||||| | | || || | || || || | Sbjct 40887 AACGGATGCC-GCTTCCCAGATCTGGTAAAAGAGCAAACCAATAAC--TACAGAAGTAAG 40943 Query 26660 ACGACTG-CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 | | || | || || || || ||||||||||| | || || || |||| || ||||| Sbjct 40944 AATAATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACG 41003 Query 26719 TATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGC 26778 || ||||| ||||||| | | || || || ||| | | ||||| | ||| || Sbjct 41004 AATACCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGC 41063 Query 26779 TGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 | | |||| || ||||| | || | ||||||| | ||| ||||| || Sbjct 41064 GGTCAATAAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATT 41117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147576079848960