Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq5102 221 1e-52 seq3550 179 4e-40 seq31365 174 2e-38 seq695 167 3e-36 seq3386 138 1e-27 >seq5102 Length=101622 Score = 221 bits (244), Expect = 1e-52 Identities = 278/382 (73%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || |||| ||||| |||||| | ||||||||| | | | | | Sbjct 52315 CTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 52256 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||||||||||||||| ||||| ||||| ||||||||||||| Sbjct 52255 CAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 52196 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | || || ||||| || || |||||||| || | | Sbjct 52195 GTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTC 52136 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | ||||| || || || |||||||| ||| | |||||| Sbjct 52135 CTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGATG 52076 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| |||||||| ||||||| | | | || || |||||| | | || | Sbjct 52075 AATGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAG 52016 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||||| || ||||| ||||||||| Sbjct 52015 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCG 51956 Query 155351 GTGTTGCATACTCTGCACCAGT 155372 ||||||||| || || || || Sbjct 51955 CTGTTGCATATTCAGCTCCTGT 51934 >seq3550 Length=137586 Score = 179 bits (198), Expect = 4e-40 Identities = 235/323 (73%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 |||| ||||| |||||||||||||| || || ||||||||||| || || || || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 |||| | |||||| |||||||| || | | | || |||||| | ||||| | || Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || || | |||||| |||||| | ||| | || ||| | |||||||| || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGG 155872 ||||||| || ||||| | |||||| || |||| ||| || || ||| ||| Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATAC-CGGG 92968 Query 155873 CAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACA 155932 | || ||| |||||| ||| ||||||||||||| ||||| || | ||| ||||| | Sbjct 92967 CTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATA 92908 Query 155933 ACTTCCCTCTTGACCTTGCTGCT 155955 |||||||||| ||||| |||||| Sbjct 92907 ACTTCCCTCTAGACCTAGCTGCT 92885 >seq31365 Length=1132 Score = 174 bits (192), Expect = 2e-38 Identities = 234/323 (72%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 |||| ||||| |||||||||||||| || || ||||||||||| || || | || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 |||| | |||||| |||||||| || | | | || |||||| | ||||| | || Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || || | |||||| |||||| | ||| | || ||| | |||||||| || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGG 155872 ||||||| || ||||| | |||||| || |||| ||| || || ||| ||| Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATAC-CGGG 237 Query 155873 CAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACA 155932 | || ||| |||||| ||| ||||||||||||| ||||| || | ||| ||||| | Sbjct 236 CTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATA 177 Query 155933 ACTTCCCTCTTGACCTTGCTGCT 155955 |||||||||| ||||| |||||| Sbjct 176 ACTTCCCTCTAGACCTAGCTGCT 154 >seq695 Length=285002 Score = 167 bits (184), Expect = 3e-36 Identities = 313/459 (68%), Gaps = 1/459 (0%) Strand=Plus/Minus Query 155005 TATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTC 155064 ||| || | ||||| | |||| | ||||||||| | | | | || || | || Sbjct 41108 TATATCAGATGGTTTGTTGTTTTAATGATCCCTACCTTATTGACCGCAACTTTTTTATTT 41049 Query 155065 ATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCT 155124 ||| ||| ||| |||||||| | || |||| |||||||||||||||||||| | || Sbjct 41048 ATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATTTCT 40989 Query 155125 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCA 155184 || ||| || | || || ||||| || || ||||||| || | | || ||| | Sbjct 40988 GGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTAGTT 40929 Query 155185 ATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAAT 155244 |||||| | | ||| || | || |||||||| ||| | ||||||| ||| | |||||| Sbjct 40928 ATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATACAAT 40870 Query 155245 GGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGT 155304 || ||||||| | | | || || |||||| | | || | | ||| ||| Sbjct 40869 GGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATAGGT 40810 Query 155305 CGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCT 155364 ||| ||| ||||||| || || ||| || |||| |||||||| | ||||||| || Sbjct 40809 CGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATATTCA 40750 Query 155365 GCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTC 155424 | || | | ||| | |||| ||| | | ||||| |||||||||| ||| Sbjct 40749 ACTCCTATTGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAATTTT 40690 Query 155425 TCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAAC 155463 ||||||| |||||| | || ||||||| |||||| ||| Sbjct 40689 TCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 138 bits (152), Expect = 1e-27 Identities = 387/589 (66%), Gaps = 24/589 (4%) Strand=Plus/Minus Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 |||||||||||||||||||| || | | ||| || | || || |||| ||| || | | Sbjct 68000 ATTGATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTACGGAAACA-CATTATTTTT 67942 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 ||||| || | | | ||| || |||||| | || || || || || | ||| | Sbjct 67941 GGTGCCATTATTCTGACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTTAGAATCG 67882 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 || | |||| || ||||| | |||||| |||| || | | | || || |||||| Sbjct 67881 ACATCCGTTGACGAATGGTTATGCAATGGCGGTCTTTATGAGTTAATTGTTTTACACTTC 67822 Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337 | | || | | || | ||| ||| |||| ||| || ||| Sbjct 67821 TTACTTGGTGTAGCTTGTTA-TATGG--GTC-GTGG--------------TCTAGGTATG 67780 Query 155338 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTT 155397 || ||||||| ||||||||| || | || || | ||||| | |||| ||| | Sbjct 67779 CGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTGTTTTCTTA 67720 Query 155398 GTTTATCCTTTCGGTCAAGGTTCTTTCT-CTGATGCGATGCCTCTTGGTATCTCTGGTAC 155456 | ||||| ||| |||||| ||| | |||||| |||| || | ||||||| ||| Sbjct 67719 ATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATCTCTGTTAC 67660 Query 155457 TTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACAT 155516 ||| || | ||| | || ||||| || ||||||| || |||||||||| || ||||| Sbjct 67659 TTTCAATTTCATGGTTGTATTCCAGGCTGAACACA---TCTTTATGCACCCATTTCACAT 67603 Query 155517 GCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGT 155576 | | | |||| |||| |||| || || ||| || |||||| | ||| ||||| Sbjct 67602 GTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGATTCTTTGGT 67543 Query 155577 GACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTT 155636 || ||| | ||| | |||| || | | || | | || | ||||||| || Sbjct 67542 AACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGTTACAGATT 67483 Query 155637 CGGACAAGAAG-AAGAAACTTATAACATTGTTGCTGCTCATGGATACTT 155684 | | ||||| | || |||||||||| || | ||||||||||| || || Sbjct 67482 CAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTT 67434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584268728625280