Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq5102 203 9e-48 seq695 165 2e-36 seq3550 154 4e-33 seq31365 150 5e-32 seq3386 118 3e-22 >seq5102 Length=101622 Score = 203 bits (224), Expect = 9e-48 Identities = 290/403 (72%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 41115 GGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCAC 41174 ||||||| ||||| ||| ||||| || | |||||| || | | | |||||||||| Sbjct 51937 GGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCAC 51996 Query 41175 TGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGT 41234 | | ||| ||| ||||| || | ||| ||||| || ||||| | | ||| || Sbjct 51997 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGA 52056 Query 41235 CCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAG 41293 ||||| ||||||| ||| || || | | |||| ||||||||||| ||||| || || | Sbjct 52057 CCGCCATTGTATAACCATTCATCAACGGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAA 52115 Query 41294 TCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAA 41353 || || || ||| | |||| | || ||||| ||||||||||| ||||| | || Sbjct 52116 ACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAG 52175 Query 41354 CGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGC 41413 || || ||||| || ||||| || ||||| |||||||| || || || || || ||||| Sbjct 52176 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGC 52235 Query 41414 GATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAAC 41472 ||| || || ||| | || || || | ||| | || ||||| | ||||||||||| | Sbjct 52236 GATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATC 52294 Query 41473 CTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | | ||| || ||||| || ||||| || | ||||||||| || Sbjct 52295 CGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52337 >seq695 Length=285002 Score = 165 bits (182), Expect = 2e-36 Identities = 314/453 (69%), Gaps = 7/453 (2%) Strand=Plus/Plus Query 41021 GTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 |||||| || || |||||||||||||||||||||||| ||| || ||||||| ||| Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 41081 ATAAACTAAGAATACAGCTAG-AGCTGCTGACAAT-GGAGCTGTGTATGCCACAAATATC 41138 ||| | ||||| |||| ||| || |||| |||| |||| || ||||| | | ||| Sbjct 40711 ATAGATCAAGAAAACAG-TAGTAGTAGCTG-CAATAGGAGTTGAATATGCAATAGCAATC 40768 Query 41139 CATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACT 41198 || || ||||||||| | | ||||||| ||| | ||| ||| ||||| Sbjct 40769 CAAGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTACA 40828 Query 41199 CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCC 41258 || | ||| ||||| || ||||| | | ||| || ||||| ||||||| ||| || || Sbjct 40829 CCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATCA 40887 Query 41259 A-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAAC 41317 | | |||| ||||||||||| |||| || | | || || | ||| | ||| Sbjct 40888 ACGGATGCC-GCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAAT 40946 Query 41318 GACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTAT 41377 | | ||||| ||||| ||||| ||||| | || || || |||| || ||||| || Sbjct 40947 AATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAAT 41006 Query 41378 GCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGT 41437 ||||| ||||||| | | || || |||||| |||| || || | || || || Sbjct 41007 ACCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGT 41066 Query 41438 TAGTAATGCTGGAATCATTAGCACACCAAACCA 41470 | ||| | || ||||||| ||| ||||||| Sbjct 41067 CAATAAGGTAGGGATCATTAAAACAACAAACCA 41099 >seq3550 Length=137586 Score = 154 bits (170), Expect = 4e-33 Identities = 228/319 (71%), Gaps = 3/319 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||| | || ||||| ||||||||||| | Sbjct 92885 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAA- 92943 Query 40589 ACTCTGTCTG-TTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | || |||| || |||||||| ||| ||| || ||| | | || |||| Sbjct 92944 AGTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTA 93002 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | | |||||||| || |||||||| ||||| |||| ||| || ||||| | | | Sbjct 93003 CAAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAG 93062 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | ||||| |||| | ||| ||||| Sbjct 93063 TGAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGT 93122 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| |||||| |||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 93123 TGAAACTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 93182 Query 40828 AAGTCTCGCCTTCCTGACC 40846 |||| || | || ||||| Sbjct 93183 AAGTTTCTTCCTCTTGACC 93201 >seq31365 Length=1132 Score = 150 bits (166), Expect = 5e-32 Identities = 227/319 (71%), Gaps = 3/319 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||| | || ||||| ||||||||||| | Sbjct 154 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAA- 212 Query 40589 ACTCTGTCTG-TTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | || |||| || |||||||| ||| ||| || ||| | | || |||| Sbjct 213 AGTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTACACGACCTTGACTATCAACTA 271 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | | |||||||| || |||||||| ||||| |||| ||| || ||||| | | | Sbjct 272 CAAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGCAG 331 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | ||||| |||| | ||| ||||| Sbjct 332 TGAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGT 391 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| |||||| |||| || | || |||| ||||| || ||||||||||| |||| Sbjct 392 TGAAACTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATTAT 451 Query 40828 AAGTCTCGCCTTCCTGACC 40846 |||| || | || ||||| Sbjct 452 AAGTTTCTTCCTCTTGACC 470 >seq3386 Length=136654 Score = 118 bits (130), Expect = 3e-22 Identities = 284/423 (67%), Gaps = 25/423 (6%) Strand=Plus/Plus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||||||||||| || | ||||||| || ||||| |||| |||||| ||||| Sbjct 67602 CATGTGAAATGGGTGCAT---AAAGATGTGTTCAGCCTGGAATACAACCATGAAATTGAA 67658 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAG-AGAAAGAACCCTGACCGAATGGATAAA 41085 || || ||||| || |||||||||||| | ||| || ||| ||| |||||| | Sbjct 67659 AGTAACAGAGATTCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGA 67718 Query 41086 CTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTC 41145 |||||| |||| ||| |||| | |||| || ||||| ||| ||||| | Sbjct 67719 TTAAGAAAACAGTGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGC 67778 Query 41146 TCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTA 41205 ||||||||| | | || |||| | || || ||||| || | || Sbjct 67779 GCATACCTAGAC--CACGA-----CCCA---TATAACA--------AGCTACACCAAGTA 67820 Query 41206 AAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTG 41264 | ||||| || ||||| | | ||| | ||||| ||| ||| ||| ||||| | | || Sbjct 67821 AGAAGTGTAAAACAATTAACTCATAAAGACCGCCATTGCATAACCATTCGTCAACGGATG 67880 Query 41265 CCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCT 41324 | | ||| |||| ||||| ||||| | || || || ||| || ||| | || Sbjct 67881 TC-GATTCTAAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTCAGAATAATGGCA 67939 Query 41325 CCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCT 41384 ||| | ||||| |||| ||||| | || || | |||| || ||||| || ||||| Sbjct 67940 CCAAAAATAAT-GTGTTTCCGTAAAGTAGAGATCTAAAAACAGGTTCACGAATACCATCA 67998 Query 41385 ATA 41387 ||| Sbjct 67999 ATA 68001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143570169362592