Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq5102 205 1e-47 seq3550 174 2e-38 seq31365 170 2e-37 seq695 149 7e-31 seq3386 127 2e-24 >seq5102 Length=101622 Score = 205 bits (226), Expect = 1e-47 Identities = 286/401 (71%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000 || ||||| || ||||| ||| ||||||||| |||||||| |||||| || ||||||| Sbjct 51934 ACAGGAGCTGAATATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 51993 Query 68001 CACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAA 68060 |||| |||||| ||| | | || | | |||||| || || | | | || Sbjct 51994 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAA 52053 Query 68061 GGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGA 68120 || || ||||| || ||||| ||||| | | ||| ||||||||||| || || ||||| Sbjct 52054 GGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 52113 Query 68121 AGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATG 68180 | ||| || || ||| |||||| || ||||||||||| || ||||| ||||| | Sbjct 52114 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGT 52173 Query 68181 AGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAAT 68240 || || || | ||||||||| | |||||||| ||||| |||||||| || |||||||| Sbjct 52174 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 52233 Query 68241 GCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAA 68300 || || || || || | ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 52234 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCAT 52293 Query 68301 CCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || | || | || || ||| ||| | ||||||||| Sbjct 52294 CCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 52334 >seq3550 Length=137586 Score = 174 bits (192), Expect = 2e-38 Identities = 234/323 (72%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||| | || |||||||||||||| |||| Sbjct 92885 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 92944 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || ||||| || || |||| ||| ||| || || |||| ||||| Sbjct 92945 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTAC---ACGACCTTGACTATCAAC 93000 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||| || |||||||| || |||||||| | ||| || | ||| | || Sbjct 93001 TACAAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGC 93060 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || || || | ||||| | |||||| || | | | || || Sbjct 93061 AGTGAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATT 93120 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| |||||| | |||||||| || || || || ||||||||||| || || || Sbjct 93121 GTTGAAACTAGCATACCGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 93180 Query 67655 GTAAGTCTCTTCTTCTTGTCCGA 67677 ||||| ||||| ||||| |||| Sbjct 93181 ATAAGTTTCTTCCTCTTGACCGA 93203 >seq31365 Length=1132 Score = 170 bits (188), Expect = 2e-37 Identities = 233/323 (72%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||| | || |||||||||||||| |||| Sbjct 154 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCCTTAAGTTCATGCATAACTTCCATACCAAA 213 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || ||||| || || |||| ||| ||| || || |||| ||||| Sbjct 214 GTTAGCATGGTTAATAATATCAGCCCG-GTATTAATTAC---ACGACCTTGACTATCAAC 269 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||| || |||||||| || |||||||| | ||| || | ||| | || Sbjct 270 TACAAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATGGTGCTAATACCTAAAGC 329 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || || || | ||||| | |||||| || | | | || || Sbjct 330 AGTGAACCAGATACCTACTACGGGCTAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATT 389 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| |||||| | |||||||| || | || || ||||||||||| || || || Sbjct 390 GTTGAAACTAGCATACCGAAAGATCAATCGGGCAAAATAACCATGAGCAGCTACGATATT 449 Query 67655 GTAAGTCTCTTCTTCTTGTCCGA 67677 ||||| ||||| ||||| |||| Sbjct 450 ATAAGTTTCTTCCTCTTGACCGA 472 >seq695 Length=285002 Score = 149 bits (164), Expect = 7e-31 Identities = 318/471 (68%), Gaps = 7/471 (1%) Strand=Plus/Plus Query 67850 GTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGG 67909 ||| |||||| |||| || || | |||||| | ||||| ||| |||||||||| || Sbjct 40651 GTTGAAAGTATCAGAGATTCCTAAAGGCATACCATCAGAAAAATTCCCTTGACCGATTGG 40710 Query 67910 ATAGACCAAGAACACAGCG--AAT-GCTGCAGACACTGGAGCAGAGTATGCTACACAGAT 67966 ||||| |||||| |||| | | |||||| | |||| || ||||| | | || Sbjct 40711 ATAGATCAAGAAAACAGTAGTAGTAGCTGCA---ATAGGAGTTGAATATGCAATAGCAAT 40767 Query 67967 CCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGAT 68026 |||||| ||||||| ||| || || ||||||| ||| |||||| ||| | | Sbjct 40768 CCAAGGGTGCATACCTAGATGGAAACTAAGTTCCAACTCACGACCTATGTAACAAGCTAC 40827 Query 68027 TCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATC 68086 || | | |||||| || || | | | |||| || ||||| || | ||| ||||| Sbjct 40828 ACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATA-CCATTCATC 40886 Query 68087 TAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAAC 68146 | | ||| ||||||||||| | || ||| | | ||| || | ||| || ||| Sbjct 40887 AACGGATGCCGCTTCCCAGATCTGGTAAAAGAGCAAACCAATAACTACAGAAGTAAGAAT 40946 Query 68147 AACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGAT 68206 || |||||||||| || ||||| ||||| | || || || | || |||||| | || Sbjct 40947 AATGACACCAGAAATAATTTTGTTTCCGTAAAGTAGAGATCCAGAAATAGGTTCACGAAT 41006 Query 68207 ACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGC 68266 |||||| ||||| | | || | || ||||| || | || || || || | ||| | Sbjct 41007 ACCATCAATATCTATTAGAAGAGCAGCAATAAAGACGATAATAAATAAAAAAGTTGCGGT 41066 Query 68267 GAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATT 68317 | ||| ||| ||||| || ||| | ||||| | | ||| | ||||| Sbjct 41067 CAATAAGGTAGGGATCATTAAAACAACAAACCATCTGATATAAAGACGATT 41117 >seq3386 Length=136654 Score = 127 bits (140), Expect = 2e-24 Identities = 246/360 (68%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 67629 AAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCT-TCTTGTCCGAACTTGTAACC 67687 || || ||||||||||| | || || ||||| | ||| ||||| | ||| ||||||| Sbjct 67434 AAATAACCATGAGCAGCTATGATATTATAAGTTTTTTCCCTCTTGACTGAATCTGTAACC 67493 Query 67688 GTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACC 67747 | || | || | | || |||| ||||| | | ||| || || | |||| | Sbjct 67494 TTCATTAATAAATTCATTTTTTGTGGTTTTCCTGATCAAACTAGAGGTTACCAAAGAATC 67553 Query 67748 GTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGG 67807 |||||| || | || || || ||||||||| |||| | | ||| || ||||| Sbjct 67554 ATGCATAACATTGAATAGGGAGTTGTCGAATACACTAGCTATGCTTAACATGTGAAATGG 67613 Query 67808 GTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAAT 67867 |||||||| || |||| || || ||||| || | |||| | || |||||| |||| || Sbjct 67614 GTGCATAAAGA---TGTGTTCAGCCTGGAATACAACCATGAAATTGAAAGTAACAGAGAT 67670 Query 67868 ACCAAGAGGCATTGCGTCAG-AGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAG 67926 | || |||| | |||| | ||| |||||| ||| ||||||| ||||| |||| Sbjct 67671 TCTTAGGAGCATACCATCAGAAAAAACTTCCTTGATCGATTGGATAGATTAAGAAAACAG 67730 Query 67927 CGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGAC 67986 | || || | || |||| || ||||| ||| ||||||| |||||||| |||| Sbjct 67731 TGGTAGCAGCTGCAACAGGAGTTGAATATGCAACAGCGATCCAATAGCGCATACCTAGAC 67790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566398054942080