Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq5102 192 7e-44 seq3550 179 4e-40 seq31365 176 5e-39 seq9889 154 2e-32 seq15646 143 3e-29 seq695 129 7e-25 seq800 102 9e-17 seq3386 86.0 7e-12 >seq5102 Length=101622 Score = 192 bits (212), Expect = 7e-44 Identities = 287/405 (71%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| | || ||||||||||| || Sbjct 52337 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 52278 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 52277 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 52219 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 52218 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 52159 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || |||||||| | |||| |||| || ||||| || ||||| || || || Sbjct 52158 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 52099 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||| || | | || || ||||| || || || |||||||| ||||| || | Sbjct 52098 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGT 52039 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 ||| |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 52038 TTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 51979 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 72638 || || ||| | |||||||| ||| ||||| ||||| ||||| Sbjct 51978 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGT 51934 >seq3550 Length=137586 Score = 179 bits (198), Expect = 4e-40 Identities = 234/320 (73%), Gaps = 9/320 (3%) Strand=Plus/Minus Query 72902 TCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 72961 |||| ||||| |||||||| ||||| || || ||||||||||| || || || |||| | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 72962 TCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCC 73021 |||| | |||||| |||||||| |||||||| ||||| |||||| | |||| | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 73022 CTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACG 73081 | ||||| || | ||||| || | | ||||| | || ||| | |||||||| || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 73082 GATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA-TGG 73137 | ||||| || ||||||| |||||| || | | ||| | || | || | || Sbjct 93023 GTTTCAATTTTAACCAAT---TTGTAGTTG--ATAGTCAAGGTCGTGTAATTAATACCGG 92969 Query 73138 GGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 73197 | ||| || ||||| || ||| |||| |||||||||||||||||| || || || Sbjct 92968 GCTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCAT 92909 Query 73198 AACTTCCCACTAGACCTAGC 73217 |||||||| ||||||||||| Sbjct 92908 AACTTCCCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 176 bits (194), Expect = 5e-39 Identities = 233/320 (73%), Gaps = 9/320 (3%) Strand=Plus/Minus Query 72902 TCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 72961 |||| ||||| |||||||| ||||| || || ||||||||||| || || | |||| | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 72962 TCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCC 73021 |||| | |||||| |||||||| |||||||| ||||| |||||| | |||| | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 73022 CTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACG 73081 | ||||| || | ||||| || | | ||||| | || ||| | |||||||| || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 73082 GATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA-TGG 73137 | ||||| || ||||||| |||||| || | | ||| | || | || | || Sbjct 292 GTTTCAATTTTAACCAAT---TTGTAGTTG--ATAGTCAAGGTCGTGTAATTAATACCGG 238 Query 73138 GGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 73197 | ||| || ||||| || ||| |||| |||||||||||||||||| || || || Sbjct 237 GCTGATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCAT 178 Query 73198 AACTTCCCACTAGACCTAGC 73217 |||||||| ||||||||||| Sbjct 177 AACTTCCCTCTAGACCTAGC 158 >seq9889 Length=72821 Score = 154 bits (170), Expect = 2e-32 Identities = 273/398 (69%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| || || |||||||| || | || ||||| || Sbjct 45036 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 45095 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || |||||||| ||| || || || Sbjct 45096 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 45155 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 45156 GTAACTTCGTGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTA 45215 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | ||| | | ||||| || ||||| Sbjct 45216 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 45275 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 45276 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTT 45335 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | || || | || ||||| |||||||| ||| | | || ||||| ||| || Sbjct 45336 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGTGCGA 45395 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTC 73761 |||| | || ||||| || ||| | || || || Sbjct 45396 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTC 45433 >seq15646 Length=30608 Score = 143 bits (158), Expect = 3e-29 Identities = 249/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 73397 CGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATC 73456 |||||||| || | || ||||| || || || || || |||||||| || | || | Sbjct 24407 CGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTA 24348 Query 73457 GGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCC 73516 || |||||||| ||| || || || || || || ||||| || ||||| | || Sbjct 24347 GGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCGTGGTATACTCATGGATTGGCCAGT 24288 Query 73517 TCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATG 73576 || ||| | || || ||||| ||||| || ||||| || || |||| | || | | Sbjct 24287 TCCTATTTGGAAGGCTGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTA 24228 Query 73577 GGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTT 73636 | ||| | | ||||| || ||||| || || |||||||||||| || || |||| | Sbjct 24227 GCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGT 24168 Query 73637 CAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTC 73696 |||||||| || || |||| ||||| || | || || | || ||||| |||||||| Sbjct 24167 CAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTT 24108 Query 73697 ATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCT 73756 ||| | | || ||||| |||| || |||| | || ||||| || ||| | || Sbjct 24107 ATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAATTGCGACCTTATAATGCAATCGCA 24048 Query 73757 TT 73758 || Sbjct 24047 TT 24046 >seq695 Length=285002 Score = 129 bits (142), Expect = 7e-25 Identities = 305/454 (67%), Gaps = 9/454 (2%) Strand=Plus/Minus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 72338 ||||||| ||| ||||||||||| | ||| | || || || || || ||| | | Sbjct 41099 TGGTTTGTTGTTTTAATGATCCC-TACCTTATTGACCGCAACTTTTTTATTTATTATCGT 41041 Query 72339 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 72398 || || ||||||| || | | ||||| || || || | ||||| || | || ||| | Sbjct 41040 CTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATTTCTGGATCTCT 40981 Query 72399 CTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATT 72458 | || || ||||| || || ||||||| | ||| |||| | || || || Sbjct 40980 ACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTAGTTATTGGTTT 40921 Query 72459 ACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCC 72518 | ||| || | ||||||||||| || | | || || |||| || || || ||||| Sbjct 40920 GCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGGTA-TACAATGGCGGTCC 40862 Query 72519 TTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTG 72578 ||| ||||| || |||| |||||| | |||| | || ||||| ||| | ||| Sbjct 40861 TTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCGTGAGTT 40802 Query 72579 GGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 72638 |||||| | | ||||| ||| |||||||| | | ||||| ||| | ||| | Sbjct 40801 GGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATATTCAACTCCTAT 40742 Query 72639 ATCTGCAGC-ATT--TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGA 72695 |||||| | | | | || ||| | | |||||| ||||||| || || ||||| Sbjct 40741 ---TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAATTTTTCTGA 40685 Query 72696 TGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 72729 ||||||||| |||| ||||| | ||| |||||| Sbjct 40684 TGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq800 Length=269375 Score = 102 bits (112), Expect = 9e-17 Identities = 169/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 || || || || ||||| || ||||| | || || ||| | || ||| ||||| Sbjct 152247 TTTGTAACTTCGTGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGATGCAATTTC 152306 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| || |||| || || |||| | || | | | ||| | ||||||| || ||| Sbjct 152307 TTAACCGCCACAGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTATTGTTACTATGG 152366 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || |||||||||||| || || |||| |||||||||||| | |||| ||| Sbjct 152367 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTATGTGGACATTT 152426 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGA-CAGTTTGAGATTGC 73719 || || || || || || ||||| |||||||| ||| ||| | || ||||| |||| Sbjct 152427 GTTGC-TTCCACGGCACGTTAGGACTAATAGGTTTTATG-TTACATCAATTTGAACTTGC 152484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 || || || || ||||| || ||||| | || || ||| | || ||| ||||| Sbjct 151333 TTTGTAACTTCGTGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGATGCAATTTC 151392 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| || |||| || || |||| | || | | | ||| | ||||||| || ||| Sbjct 151393 TTAACCGCCACAGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTATTGTTACTATGG 151452 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || |||||||||||| || || |||| |||||||||||| | |||| ||| Sbjct 151453 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTATGTGGACATTT 151512 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699 || || || || || || ||||| |||||||| ||| Sbjct 151513 GTTGC-TTCCACGGCACGTTAGGACTAATAGGTTTTATG 151550 >seq3386 Length=136654 Score = 86.0 bits (94), Expect = 7e-12 Identities = 237/360 (66%), Gaps = 9/360 (3%) Strand=Plus/Minus Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 ||||| ||| | |||||| ||| ||||| ||| | ||||| | || || | Sbjct 67788 CTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACT 67729 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGG---TTCATTCTCTGATGGTATGCCACTAGGT 72711 || ||| | | |||||| ||| ||| || || || ||||||||||||| ||| | Sbjct 67728 GTTTTCTTAATCTATCCAATCGATCAAGGAAGTT--TTTTCTGATGGTATGCTCCTAAGA 67671 Query 72712 ATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCAC 72771 ||||| | ||| ||||| |||||| | || ||||| || |||| |||| | |||||| Sbjct 67670 ATCTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAAC---ACATCTTTATGCAC 67614 Query 72772 CCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCAC 72831 || || || ||| | | |||| || | |||| || |||| || ||||| Sbjct 67613 CCATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCAT 67554 Query 72832 GGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTAC 72891 | ||| | || || || | | ||||| | || ||| | || || | || | Sbjct 67553 GATTCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAA 67494 Query 72892 GGCTATAAGTTCGGACAAGA-AGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950 || || | ||| | ||||| ||| |||| ||||| || | ||||||||||| || || Sbjct 67493 GGTTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTT 67434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572318714631040