Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9751 201 1e-45 seq12078 181 1e-39 seq10024 170 2e-36 >seq9751 Length=50749 Score = 201 bits (222), Expect = 1e-45 Identities = 210/273 (77%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||| ||||| ||||| || |||| | |||| | | |||| Sbjct 49018 GAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGCCCGCGCCTCGGAGATTTGG 48959 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||| ||||| |||| ||||| || ||||| |||||| |||||||||| Sbjct 48958 ACCTCTTTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCGTCGGAGGCGGCGAAA 48899 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||| ||||||||||| ||| || |||| | |||||| |||| Sbjct 48898 AAGGCAAGAACATGAGTGATGAAGTGGCGCTCATCGGCGGTGAGTGTTTCCCAGT-GACG 48840 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | |||| || || ||||||||||||||||| | ||| || ||||| || ||||| Sbjct 48839 GAGATCGGATGACAGATCGACCTCCTCGGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 48780 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||||||||| |||| |||| ||||| Sbjct 48779 CATTTCCCATACTTGTGGGTATTGGATGGGGAA 48747 Score = 183 bits (202), Expect = 4e-40 Identities = 181/233 (78%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | |||||||| || | ||| || |||||||||||||| || ||||||||| Sbjct 49258 CCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACTTCCGGAGAAAAAG 49199 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||||||| |||||| |||| | ||||||||| || || || ||||| | Sbjct 49198 ATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTC----TCCTCC--G 49145 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||||| ||||| ||||| ||||||||||| ||| |||||||||| || |||||| Sbjct 49144 TTGATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTCAATGGCG 49085 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||||| || |||||| | | |||||||| ||||| || | ||||| Sbjct 49084 CGGAAGAGTCGGCTCTTTTCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAG 49032 >seq12078 Length=35335 Score = 181 bits (200), Expect = 1e-39 Identities = 229/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || || |||||||||||||| ||||| || || | | |||| | | |||| Sbjct 4311 GAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCACGCGCCTCGGAGATTTGG 4252 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||||||| |||| || || || || || || || ||| || ||| Sbjct 4251 ACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGAGGCTGCAAAA 4192 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||||||||||||| || |||| | |||||| |||| Sbjct 4191 AAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCCCAGT-GACG 4133 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | |||| | || || |||||||| ||||| | || || ||||| || ||||| Sbjct 4132 GAGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCGGCTTTCTTGTA 4073 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCG 869931 ||| ||||||||||| |||| |||| || || | ||| |||| ||||| ||| Sbjct 4072 CATTTCCCATACTTGTGGGTATTGGATCGGAAACATACAAAACCGGTCTGGGTTCTCGGT 4013 Query 869932 CAACAGGGGTTC 869943 || ||| || || Sbjct 4012 CAGCAGTGGCTC 4001 Score = 134 bits (148), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || | |||||| |||||||||||||| || ||||||||| Sbjct 4551 CCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAG 4492 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| | | ||||| | || | ||||||||| || || || ||| | Sbjct 4491 ATCCCCTCAATGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCCGCC------G 4438 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||||| ||||| ||||| ||||||||||| ||| |||| ||||| || | ||| Sbjct 4437 TTGATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGGCA 4378 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGA 869444 || |||||| | |||||| | | || |||| || || |||| Sbjct 4377 CGGAAGAGGCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGA 4332 >seq10024 Length=53621 Score = 170 bits (188), Expect = 2e-36 Identities = 201/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || || |||||||||||||| || || || || | | |||| | | |||| Sbjct 14697 GAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCACGCGCCTCGGAGATTTGG 14638 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||||||| |||| || || || ||||| || ||| ||| || ||| Sbjct 14637 ACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAGGCAGCAAAA 14578 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||||||||||||| || |||||| ||||||| | Sbjct 14577 AAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCCCAGTGTGGG 14518 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | || || |||||||| ||||| | ||| || ||||| || |||||| Sbjct 14517 AGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGCTTTCTTGTAC 14458 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| || || |||| |||| || || Sbjct 14457 ATTTCCCAAACCTGTGGGTATTGGATCGGAAA 14426 Score = 147 bits (162), Expect = 3e-29 Identities = 168/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || | |||||| |||||||||||||| || |||||||| Sbjct 14937 CCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAT 14878 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| | | ||||| |||| | ||||||||| || || || ||| | Sbjct 14877 ATCCCCTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCC------G 14824 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||||| ||||| ||||| ||||| ||||| ||| |||||||||| || ||||| Sbjct 14823 TTGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCA 14764 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGA 869444 || |||||| || |||||| ||| || |||| || || |||| Sbjct 14763 CGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGA 14718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100780171843696