Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9751 196 8e-44 seq10024 188 1e-41 seq12078 174 2e-37 >seq9751 Length=50749 Score = 196 bits (216), Expect = 8e-44 Identities = 217/287 (76%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | |||||||| || | ||| || ||||| |||||||| || ||||||||| Sbjct 49258 CCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACTTCCGGAGAAAAAG 49199 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||||||| |||||| ||| | ||||||||| ||||| || |||| | Sbjct 49198 ATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTC----TCCTC--CG 49145 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||||| ||||| |||||||| |||||||| ||| | |||||||| || |||||| Sbjct 49144 TTGATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTCAATGGCG 49085 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || ||||| || ||| || | | |||||||| |||||| || | ||||| ||| Sbjct 49084 CGGAAGAGTCGGCTCTTTTCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAGACTGTAC 49025 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGC 794665 |||| ||||| || || || || ||||| ||||| || || ||||| Sbjct 49024 ATCTCAGAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGC 48978 Score = 174 bits (192), Expect = 2e-37 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | ||||||||| ||||| || || |||| ||||| ||| ||||| ||| Sbjct 48973 GCCTCGGAGATTTGGACCTCTTTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCG 48914 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||| || || || |||| ||||| ||||| ||| || |||| Sbjct 48913 TCGGAGGCGGCGAAAAAGGCAAGAACATGAGTGATGAAGTGGCGCTCATCGGCGGTGAGT 48854 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | | |||| || ||||||||||||||||||||||| || || Sbjct 48853 GTTTCCCAGT-GACGGAGATCGGATGACAGATCGACCTCCTCGGCGGTCCAAAACGACGC 48795 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| || |||||||| ||||||| || |||| |||||||||||| Sbjct 48794 TTCGGCTTTCTTGTACATTTCCCATACTTGTGGGTATTGGATGGGGAACA 48745 >seq10024 Length=53621 Score = 188 bits (208), Expect = 1e-41 Identities = 215/288 (75%), Gaps = 7/288 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || | |||||| ||||| |||||||| || |||||||| Sbjct 14937 CCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAT 14878 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| | | ||||| ||| | ||||||||| ||||| || ||| | Sbjct 14877 ATCCCCTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCC------G 14824 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||||| ||||| |||||||| || ||||| ||| | |||||||| || ||||| Sbjct 14823 TTGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCA 14764 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || |||||| || ||| || ||| || |||| ||| || |||| || || ||| Sbjct 14763 CGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTAC 14704 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 |||| |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 14703 ATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCA 14656 Score = 161 bits (178), Expect = 2e-33 Identities = 187/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | ||||||||| |||||||| ||| |||| || || ||| ||||| || Sbjct 14652 GCCTCGGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCA 14593 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| || ||||||||||| ||||| |||| ||||| ||||||||| || ||||| Sbjct 14592 TCGGAGGCAGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGC 14533 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| |||| | ||||| |||||||| |||||||| || || Sbjct 14532 GTTTCCCAGTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCT 14473 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || |||||||| ||||| | | || |||| |||| || |||| | || ||| Sbjct 14472 TCGGCTTTCTTGTACATTTCCCAAACCTGTGGGTATTGGATCGGAAACATACAGAACCGA 14413 Query 796390 TTGGGGTTCTCG 796401 | ||||||||| Sbjct 14412 TCTGGGTTCTCG 14401 >seq12078 Length=35335 Score = 174 bits (192), Expect = 2e-37 Identities = 212/288 (74%), Gaps = 7/288 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 4551 CCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAG 4492 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| | | ||||| | | | ||||||||| ||||| || ||| | Sbjct 4491 ATCCCCTCAATGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCCGCC------G 4438 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||||| ||||| |||||||| |||||||| ||| | || ||||| || | ||| Sbjct 4437 TTGATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGGCA 4378 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || |||||| | ||| || | | || |||| ||| || |||| ||| || ||| Sbjct 4377 CGGAAGAGGCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACTGTAC 4318 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 |||| |||||||| ||||| |||||||||||||| || || |||||| Sbjct 4317 ATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCA 4270 Score = 163 bits (180), Expect = 4e-34 Identities = 198/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | ||||||||| |||||||| ||| |||| || || ||| || || || Sbjct 4266 GCCTCGGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCA 4207 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| || ||||||||||| ||||| |||| ||||| ||||||||| || |||| Sbjct 4206 TCAGAGGCTGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGA 4147 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | | |||| | || || |||||||| ||||||||||| || Sbjct 4146 GTTTCCCAGT-GACGGAGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGC 4088 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| || |||| |||| || |||| | ||| || Sbjct 4087 TTCGGCTTTCTTGTACATTTCCCATACTTGTGGGTATTGGATCGGAAACATACAAAACCG 4028 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | ||||||||| ||||| ||||| Sbjct 4027 GTCTGGGTTCTCGGTCAGCAGTGGCTC 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908003648017232