Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq14711 118 2e-21 seq3059 109 9e-19 seq2335 102 1e-16 seq7474 100 4e-16 seq8977 98.7 2e-15 seq1278 95.1 2e-14 seq9927 93.3 7e-14 seq6053 93.3 7e-14 seq621 93.3 7e-14 seq10551 91.5 2e-13 seq8995 87.8 3e-12 seq3224 87.8 3e-12 seq2478 87.8 3e-12 seq10 86.0 1e-11 >seq14711 Length=21231 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| |||||||| | || || || | | Sbjct 4842 TGCAAATCTTTGTCAAGACTCTTACTGGAAAGACAATTACCTTGGAGGTTGAGAGTTCAG 4901 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| || |||||||| |||||||| || |||| Sbjct 4902 ATACCATTGATAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCAGACCAAC 4961 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||| ||||| | || ||| ||||| | | |||||||||| Sbjct 4962 AAAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGAAGAACTCTTGCCGATTATAATA 5021 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| ||||||| || Sbjct 5022 TCCAAAAGGAGTCTACTCTCCATTTGGT 5049 >seq3059 Length=143113 Score = 109 bits (120), Expect = 9e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | ||||| | || || || || || ||| |||| || ||| || Sbjct 2203 TGCAGATATTCGTGAAAACCCTGACCGGCAAGACTATCACTCTTGAAGTCGAAAGCTCCG 2144 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || ||| |||||||||||| || || ||||| | Sbjct 2143 ACACCATAGATAATGTCAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCCGGATCAGC 2084 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || |||||| | || ||| | | || || | ||||| |||| Sbjct 2083 AGCGATTGATCTTTGCCGGCAAACAACTGGAGGATGGTCGCACCTTGGCCGATTACAATA 2024 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| ||||||||| ||||| Sbjct 2023 TCCAAAAGGAATCGACTCTCCAT 2001 >seq2335 Length=171082 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || || || || ||||| |||||| | || || ||| | Sbjct 23449 TGCAGATTTTTGTAAAGACTTTGACTGGGAAAACGATTACTTTGGAAGTTGAAAGCTCGG 23508 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||| || || || ||||| || ||||| ||||| | Sbjct 23509 ATACGATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAGC 23568 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| ||||||||||| || ||| || || || | |||||||||| Sbjct 23569 AGAGGCTCATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTTTGGCTGATTATAATA 23628 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 23629 TTCAGAAAGAGTCCAC 23644 >seq7474 Length=135391 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| |||||||| | || || || | | Sbjct 126679 TGCAAATCTTTGTCAAGACTCTCACCGGAAAGACAATTACCTTGGAGGTCGAGAGTTCGG 126738 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| || |||||||| || || | || |||| Sbjct 126739 ATACCATTGATAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATCTCATCAGACCAAC 126798 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||| ||||| | || ||| ||||| | | |||||||| | Sbjct 126799 AAAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGAAGAACTCTTGCCGATTATAACA 126858 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| ||||||| || Sbjct 126859 TCCAAAAGGAGTCTACTCTCCATTTGGT 126886 >seq8977 Length=60439 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||| ||| | ||||| ||| ||||| || |||||||| || ||||| |||||| Sbjct 30071 GATATCATTGATAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 30012 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | ||||||||||| ||||| | || ||| ||||| | | ||||||||| Sbjct 30011 CAAAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGAAGAACTCTGGCCGATTATAAT 29952 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| || || || ||||||| || Sbjct 29951 ATCCAAAAGGAGTCTACCCTCCATTTGGT 29923 >seq1278 Length=225562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || || ||||| |||||| | || || || | | Sbjct 157849 TGCAGATCTTCGTCAAAACTTTGACCGGGAAAACCATTACTCTGGAGGTGGAGAGTTCTG 157908 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || |||||||| ||||| || || || | Sbjct 157909 ATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGACCAGC 157968 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| || || |||||||| || ||| || || || | ||||| |||| Sbjct 157969 AGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAATA 158028 Query 146212 TACAAAAAGAATCGACT 146228 ||||||| ||||| ||| Sbjct 158029 TACAAAAGGAATCCACT 158045 >seq9927 Length=49610 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || | ||||| || || ||||| | || ||||| | | Sbjct 13749 TGCAAATATTTGTGAAGACTCTCACAGGGAAGACTATTACCTTGGAAGTAGAGAGTTCTG 13690 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| |||| ||| || || || ||||| |||||||| ||||||| Sbjct 13689 ACACAATTGACAATGTTAAAACTAAGATCCAGGACAAGGAAGGGATTCCACCTGATCAAC 13630 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||| || || || || | || ||| || || || |||||||||| Sbjct 13629 AGAGGCTGATTTTCGCTGGAAAGCAGCTGGAGGATGGGAGGACACTAGTTGATTATAATA 13570 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || || ||||| |||| || || |||| Sbjct 13569 TTCAGAAGGAGTCGACCCTCCACTTGGTCCTACG 13536 >seq6053 Length=86585 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || |||||||||||||| |||| |||||| || Sbjct 18679 TGCAGATCTTTGTTAAAACCTTGACCGGAAAAACAATTACCCTTGAGGTAGAAAGCTCCG 18738 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||||| || ||| ||||| ||||| || || |||| Sbjct 18739 ATACGATCGACAATGTGAAGGCGAAAATCCAGGATAAGGAAGGGATTCCTCCAGACCAAC 18798 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| ||||| || || | || ||| || || | | ||||| |||| Sbjct 18799 AGAGGTTGATTTTCGCAGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAATA 18858 Query 146212 TACAAAAAGAATCGAC 146227 |||| ||||| || || Sbjct 18859 TACAGAAAGAGTCTAC 18874 >seq621 Length=294110 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || ||||||||||||||||| |||| ||||| | Sbjct 255838 TGCAGATCTTTGTTAAAACCTTGACAGGAAAAACAATTACCCTTGAGGTAGAGAGCTCGG 255897 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||||| || ||| ||||||||||| || || |||| Sbjct 255898 ACACGATCGACAATGTGAAAGCGAAAATCCAGGATAAGGAAGGCATTCCTCCGGACCAAC 255957 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| ||||| || || | || ||| || || | ||||||| |||| Sbjct 255958 AGAGGTTGATTTTCGCAGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCAGATTACAATA 256017 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 256018 TCCAGAAAGAGTCTAC 256033 >seq10551 Length=45279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | || |||||||| || ||| | || || || | | Sbjct 35042 TGCAGATCTTTGTAAAAACCCTCACTGGAAAAACCATCACTTTGGAGGTGGAGAGTTCTG 35101 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||| | | ||||| || || || ||| || || ||||| ||||| ||||||| Sbjct 35102 ATACTACTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCTGATCAAC 35161 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || || || || ||| || || | | |||||||||| Sbjct 35162 AGAGGCTTATTTTTGCTGGAAAGCAGTTGGAGGATGGGAGGACACTTGCTGATTATAATA 35221 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || |||| || || Sbjct 35222 TTCAGAAAGAGTCAACCCTCCACTTGGT 35249 >seq8995 Length=56531 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| | || || || ||| | ||||| ||| || Sbjct 47641 TGCAGATCTTTGTTAAAACCCTAACCTGCAAGACTATCACTCTCGATGTCGAAAGCTCCG 47700 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || ||| |||||||||||| || | ||||| | Sbjct 47701 ACACCATAGATAATGTCAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCAGGATCAGC 47760 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || || |||||| | || ||| | || || | ||||| |||| Sbjct 47761 AGCGATTGATCTTCGCCGGAAAACAACTCGAGGATGGCCGCACCTTGGCGGATTACAATA 47820 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| ||||||||| ||||| Sbjct 47821 TCCAAAAGGAATCGACTCTCCAT 47843 >seq3224 Length=148195 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | |||||||| || |||||| | || || || | Sbjct 67056 TGCAAATTTTTGTGAAGACTCTTACAGGAAAGACTATTACTTTGGAAGTTGAGAGCTCTG 67115 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || || || || || |||||||| ||||||| Sbjct 67116 ATACAATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAGGGGATTCCACCAGATCAAC 67175 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || || || || || || || || ||| || || | | |||||||||| Sbjct 67176 AGAGGCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGGAGGACACTTGCTGATTATAATA 67235 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| ||||| |||| || || Sbjct 67236 TTCAGAAAGAGTCGACCCTCCACTTGGT 67263 >seq2478 Length=159706 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||| | || | || || || || |||| || ||| || | Sbjct 146408 TGCAAATCTTCGTTAAAATCCTCACTGATAAGACCATCACCCTTGAGGTGGAAAATTTGG 146349 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||| ||| || || ||| |||||||| || ||||| || |||| Sbjct 146348 ATACCATCGACTATGCAAAGGTCAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAAC 146289 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||| || || ||| | || | | || ||||| | Sbjct 146288 AGAGGTTGATCTTTGCTGGTAAACAGTTGGAGGATGGCCGTACTCTGGCTGACTATAACA 146229 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| ||||| || |||| || || | ||||||||||| || | ||||| || Sbjct 146228 TCCAAAAGGAATCCACACTCCACTTGGTCCTTCGATTAAGAGGTGGAATGTAAATTTT 146171 >seq10 Length=577822 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || ||||| || || | || || || | || Sbjct 543186 TGCAAATCTTCGTCAAAACCTTGACCGGCAAAACCATAACCCTCGAGGTCGAGAGTTCCG 543127 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || ||||| ||| ||||||||||| |||||||| || | Sbjct 543126 ACACCATCGACAACGTTAAGGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAGC 543067 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || ||||| | || || | || || | |||||||||| Sbjct 543066 AACGCCTCATCTTCGCCGGCAAACAGCTGGAAGACGGCCGTACCTTGGCGGATTATAATA 543007 Query 146212 TACAAAAAGAATCGACT 146228 | || || ||||||||| Sbjct 543006 TCCAGAAGGAATCGACT 542990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785404919224960