Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1842 87.8 2e-12 seq313 87.8 2e-12 seq7473 84.2 3e-11 seq3230 84.2 3e-11 >seq1842 Length=233203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 156978 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 157037 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 157038 GTTCCTCAATCATTTG 157053 >seq313 Length=379748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 49347 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 49288 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 49287 GTTCCTCAATCATTTG 49272 >seq7473 Length=70439 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||| ||||||||| |||||||||||| | ||| Sbjct 2241 AATTTGTCTGTTACTTCACCATACAATGCTGGTTTTGATGGTGATGAAATGAATATGCAT 2300 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 2301 GTTCCTCAATCATTTG 2316 >seq3230 Length=142482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | | || ||||||||||||||||| |||||||||||| | ||| Sbjct 36150 AATTTGTCTGTTACTTCACCGTACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 36091 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 36090 GTTCCTCAATCATTTG 36075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634562366976640