Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3059 122 8e-23 seq621 98.7 1e-15 seq1278 96.9 3e-15 seq6053 95.1 1e-14 seq3967 91.5 1e-13 seq10 91.5 1e-13 seq6480 89.7 5e-13 seq8995 87.8 2e-12 seq1833 87.8 2e-12 seq1145 87.8 2e-12 seq2335 86.0 6e-12 seq19277 84.2 2e-11 >seq3059 Length=143113 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| || ||||||||| || |||| || || |||||||| || Sbjct 2008 GTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCCAGTTGTTTGCCG 2067 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| || |||||||| ||||| ||||||||||| || ||| || ||| Sbjct 2068 GCAAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTG 2127 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| ||||||| ||| | ||||||||||||| ||| Sbjct 2128 ACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTT 2187 Query 137395 TTTACGAATATTTGCAT 137411 || |||||||| ||||| Sbjct 2188 TTCACGAATATCTGCAT 2204 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || | ||| | || || || || || ||||| |||||| Sbjct 2205 GCCACCGCGGAGACGGAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTATAATCGGC 2264 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | ||| || || || || || || |||||| ||| |||||||| ||||| Sbjct 2265 GAGTGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGAGG 2324 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||||||||| || ||| || ||| | | || | ||||| | | ||| || Sbjct 2325 GATGCCTTCTTTATCTTGAATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGAC 2384 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||| | ||||||||||| | ||||| |||||||| ||||| Sbjct 2385 TTCAAGAGTGATTGTCTTGCCGGTTAGGGTTTTGACGAATATCTGCAT 2432 >seq621 Length=294110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||| | ||| || ||||| || ||||| || ||| Sbjct 255607 CCACCACGGAGACGGAGGACCAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCGGCG 255548 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||||||| || || || || |||||| || || || || |||||| Sbjct 255547 AGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGT 255488 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 255487 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTATCTATGGTGTCTGAGCTTTCGACT 255428 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||||||||| ||||| ||||| || ||||| Sbjct 255427 TCAAGTGTTATAGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCAT 255381 >seq1278 Length=225562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||||| || || || ||||| |||||||||||| || || | ||| Sbjct 157832 CAAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGACCGTC 157773 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||| ||||| || || |||| ||||||||||| || || || || ||||| ||||| Sbjct 157772 CTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTC 157713 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || || | | || | ||||| | | || ||||| | || | || Sbjct 157712 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 157653 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| |||| ||||| ||||| || ||||| Sbjct 157652 CTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 157620 >seq6053 Length=86585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||| | ||| ||||| || || ||||| ||||| Sbjct 18448 CCACCACGGAGACGGAGGACCAGATGTAGTGTCGATTCCTTCTGAATGTTATAATCAGCG 18389 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| ||||| || || || |||||| || || || || ||||| Sbjct 18388 AGAGTACGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGG 18329 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 18328 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAGCTTTCGACT 18269 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||||||||| || ||||| ||||| || ||||| Sbjct 18268 TCAAGAGTTATAGTCTTGCCGGTTAAGGTTTTGACGAAGATCTGCAT 18222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || ||||| || || || ||||||||| || |||| || || | || Sbjct 18652 TGAAGAGTCGATTCCTTCTGAATATTGTAATCGGCCAAGGTGCGACCATCGTCTAACTGC 18593 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || || |||||| || ||||| || ||||| |||||||| ||||| ||| || Sbjct 18592 TTCCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTG 18533 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||||| | | ||| ||||||| ||| | ||||||||||| Sbjct 18532 GTCTTGACATTGTCTATGGTGTCAGAGCTTTCCACTTCAAGAGTGATAGTCTTGCCGGTT 18473 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | ||||| ||||| || |||||| Sbjct 18472 AGGGTTTTAACGAAGATCTGCATA 18449 >seq3967 Length=121343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || ||||||| || || || ||||| |||||||| || || || | ||| Sbjct 66445 CAAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTACGGCCGTC 66386 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||| ||||| ||||| |||| ||||||||||| || || || || ||||| ||||| Sbjct 66385 CTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 66326 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || || | | || | ||||| | | || ||||| | || | || Sbjct 66325 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 66266 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||||| ||||| ||||| |||||||| Sbjct 66265 TTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 66233 >seq10 Length=577822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | | || ||| | |||| || ||||| || || || || ||||| | Sbjct 542961 CCTCCACGAAGCCTCAGAACAAGGTGAAGAGTCGATTCCTTCTGGATATTATAATCCGCC 543020 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || ||||| || || |||| || |||||||| ||||| || Sbjct 543021 AAGGTACGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATGAGGCGTTGCTGGTCGGGTGGG 543080 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| |||||| || | | || | ||||| | || || Sbjct 543081 ATGCCTTCTTTGTCTTGAATTTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACC 543140 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || ||||||||||| ||||| ||||| ||||||||| Sbjct 543141 TCGAGGGTTATGGTTTTGCCGGTCAAGGTTTTGACGAAGATTTGCATA 543188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC- 137240 ||||| || || | ||| | ||| | |||| ||||| |||||||| ||||| ||||| Sbjct 561947 TGGCCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTTTGAATGTTATAATCA 562006 Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300 ||| | || ||| || || | |||||| || ||| |||| || | ||||||||| || Sbjct 562007 GCTAAA-GTCCTCCCATCCTCCAATTGTTTGCCTGCAAAGATAAGCCTTTGCTGATCAGG 562065 Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360 || || ||||| || || ||| || || | | || | ||| || | ||| Sbjct 562066 GGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATTATCTATCGTATCCGAACTTTC 562125 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | || |||||||||||||| || || || || ||||| Sbjct 562126 CACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 562176 >seq6480 Length=82479 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 151100 AATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttt 151159 |||| ||| || | ||||||| || || || ||||| | ||| |||| ||| ||| || Sbjct 5181 AATGTATCTGCAAGCCCTTGAACTCCAATACCAATGGGTCTATGACGCAAATTTGATCTT 5240 Query 151160 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 || |||||||||| ||||||| ||||| |||||||||||| || Sbjct 5241 TTAGCAGTTTCAAAAGGGTAGTAATTGACATCAATAATTTTGTT 5284 >seq8995 Length=56531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| || |||||||| || |||| || ||||||||||| || Sbjct 47836 GTCGATTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCATCCTCGAGTTGTTTTCCG 47777 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||| || |||||||| |||| ||||||||||| || ||| || ||| Sbjct 47776 GCGAAGATCAATCGCTGCTGATCCTGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTG 47717 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| || || | ||| | ||||||| ||| | ||| Sbjct 47716 ACATTATCTATGGTGTCGGAGCTTTCGACATCGAGAGTGATAGTCTTGCAGGTTAGGGTT 47657 Query 137395 TTTACGAATATTTGCATA 137412 || || || || |||||| Sbjct 47656 TTAACAAAGATCTGCATA 47639 >seq1833 Length=187927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| | ||||| || ||||| || || |||||||||||| || || | ||| Sbjct 43496 CAAAACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTC 43555 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||| || || || ||| |||| || | |||||||| || || ||||| || ||||| Sbjct 43556 CTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGGATGCCCTCCTTGTC 43615 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || || | | || | |||||| | | || ||||| | || | || Sbjct 43616 TTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTATGGT 43675 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||||| ||||| ||||| |||||||| Sbjct 43676 TTTACCGGTCAGGGTTTTGACGAAGATTTGCAT 43708 >seq1145 Length=230503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||| | |||| ||||||||| || || || Sbjct 12840 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCG 12781 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || |||||||| ||||| || |||||||||||||| ||| || || Sbjct 12780 GCGAAGATGAGGCGTTGCTGGTCGGGTGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTG 12721 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || || | || | ||||| || || | ||| Sbjct 12720 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 12661 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 12660 TTGACGAAGATCTGCATA 12643 >seq2335 Length=171082 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | ||| | |||| || || ||||| || || || ||||| Sbjct 23677 TGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 23618 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || || || ||||| | ||||||||||||| |||| || | |||||||| || Sbjct 23617 GCCAAAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGT 23558 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| ||| || || | | || | ||| || | | ||| Sbjct 23557 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTAACATTATCAATCGTATCCGAGCTTTCA 23498 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 23497 ACTTCCAAAGTAATCGTTTTCCCAGTCAAAGTCTTTACAAAAATCTGCAT 23448 >seq19277 Length=10442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 151100 AATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttt 151159 |||| ||| || | ||||||| || || || |||| | ||| |||| ||| ||| || Sbjct 8188 AATGTATCTGCAAGTCCTTGAACTCCAATACCAATGGCCCTATGACGCAAATTTGATCTT 8247 Query 151160 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 151205 || ||||||| || ||||||| ||||| |||||||||||| |||| Sbjct 8248 TTGGCAGTTTAAACAGGGTAGTAATTGACATCAATAATTTTGTTCA 8293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488070796281600