Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6422 122 2e-22 seq13058 102 2e-16 seq380 100 7e-16 seq313 96.9 8e-15 seq10024 93.3 1e-13 seq3230 93.3 1e-13 seq1842 93.3 1e-13 seq1552 93.3 1e-13 seq12846 89.7 1e-12 seq12078 87.8 4e-12 seq7473 84.2 5e-11 >seq6422 Length=82514 Score = 122 bits (134), Expect = 2e-22 Identities = 202/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| | || ||||| || | ||||| | | |||| |||| | || |||||| Sbjct 4002 GACTTCATTAACAAGGAACTTATTCTGTTTTCCATTGCTGATCTTCAAAGATCAATTCCT 3943 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | | ||||| ||||| ||| ||| | ||||| | ||| || || |||||| Sbjct 3942 TCTATGGTTGATGGCTTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTGCCTTTAAAAGA 3883 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||| || ||| |||| || |||||||||||||||| ||| | | | Sbjct 3882 AATTTTGTAAAAGAGGCAAAGGTTTCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGCT 3823 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 || ||||| |||||| | |||| || | ||| | || | || ||||||||| || Sbjct 3822 TACCATCATGGTGAACAGAGTCTTATGAGTACCATTATCGGAATGGCTCAAGATTTTGTG 3763 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 | ||||| |||| | ||| |||||||||||||||||| |||||| Sbjct 3762 GGCAGCAACAATATAAACGTTCTTCGTCCAAATGGTCAATTTGGTACTCGTA 3711 >seq13058 Length=29985 Score = 102 bits (112), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| |||||| |||| || || ||||| | ||||| || ||||||||||| Sbjct 4771 CATTTAAATGACGGAGATTTTGTCCTTTTCAACCGTCAACCTAGTCTTCATAAAATGTCA 4830 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTG 305426 || |||| |||| | ||| | ||||| | | |||||||| ||||| | || Sbjct 4831 ATCATGGGCCATAGAATCA--GGATTATGCCATACTCAACATTTCGTCTAAATCTCTCTG 4888 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 4889 TTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAAT 4948 Query 305487 CA 305488 || Sbjct 4949 CA 4950 >seq380 Length=348000 Score = 100 bits (110), Expect = 7e-16 Identities = 198/292 (68%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||| |||| ||||| || ||||| | |||| |||| | || |||||| Sbjct 2184 GACTTTATTAATAAGGAACTTATTTTGTTTTCGATAGCTGATCTTCAAAGGTCGATTCCT 2243 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| ||| | || || | ||| || || || ||| Sbjct 2244 TCCATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAAATCCTTTTCTGTGCCTTTAAGAGA 2303 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||| || ||| |||| || ||||| ||||||| || ||| | | | Sbjct 2304 AATTTTGTAAAAGAGGCAAAGGTTTCTCAATTTTCAGGT-ATGTTTCCGAGCATTCTGCT 2362 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 |||||||| || ||| | |||| || | ||| | || | || ||||||||| || Sbjct 2363 TATCATCATGGCGAACAGAGTCTTATGAGTACCATTATTGGAATGGCTCAAGATTTTGTG 2422 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 | | |||||| | || || ||| |||||||||||||||||| |||||| Sbjct 2423 GGTAGTAACAACATCAACCTTCTTCGTCCAAATGGTCAATTTGGTACTCGTA 2474 >seq313 Length=379748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| | ||| |||| || || |||||| | ||||| || |||||||||| Sbjct 49457 GACATTTAATTGATGGAGATTATGTCCTTTTCAATCGTCAACCTAGTCTCCATAAAATGT 49398 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 49397 CAATCATGGGCCATAGAATCC--GGATTATGCCATACTCTACATTTCGTCTAAATTTGTC 49340 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 49339 TGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 49280 Query 305485 ATCA 305488 |||| Sbjct 49279 ATCA 49276 >seq10024 Length=53621 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 ||||||||||| |||| || ||||| || || || |||||| || || |||||| | Sbjct 14855 GCTTTTGCTTGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGTTG 14914 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || || ||||||||| | | || |||||| | || |||||| |||||||| Sbjct 14915 AAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCCAATGAGTTAATCTCGCGAGATGAA 14974 Query 131987 G 131987 | Sbjct 14975 G 14975 >seq3230 Length=142482 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| | ||| |||| || || || ||| | ||||| || |||||||||| Sbjct 36260 GACATTTAATTGATGGAGATTATGTCCTTTTTAATCGTCAACCTAGTCTCCATAAAATGT 36201 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 36200 CAATCATGGGCCATAGAATCC--GGATTATGCCATACTCTACATTTCGTCTAAATTTGTC 36143 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 36142 TGTTACTTCACCGTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 36083 Query 305485 ATCA 305488 |||| Sbjct 36082 ATCA 36079 >seq1842 Length=233203 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| || || || ||| | ||||| || ||||||||||| || |||| |||| | Sbjct 156885 GATTATGTCCTTTTTAATCGTCAACCTAGTCTCCATAAAATGTCAATCATGGGCCATAGA 156944 Query 305384 GTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 || | ||||| | ||| |||||||| ||||| | || | | | || || | Sbjct 156945 ATCC--GGATTATGCCATATTCTACATTTCGTCTAAATTTGTCTGTTACTTCACCATACA 157002 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 157003 ATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAATCA 157049 >seq1552 Length=328184 Score = 93.3 bits (102), Expect = 1e-13 Identities = 199/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| || | ||||| | |||| |||| | || |||||| Sbjct 289234 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATAGCTGATCTTCAAAGGTCGATTCCT 289175 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| ||| | || || | |||||| || || ||| Sbjct 289174 TCCATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAAATCCTTTTCAGTGCCTT-AAGAGA 289116 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||| || ||| |||| | ||||||||||||| | ||| | | | Sbjct 289115 AATTTTGTAAAAGAGGCAAAGGTTTCTCAATCTTCAGGTTATGTTTCCGTGCATTCTGCT 289056 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 | ||||| ||||| || |||| | | || | ||| | || | || ||||||||| Sbjct 289055 GACCATCATGGTGAGCAGAGTCTTATGA--GTACCATTATTGGAATGGCTCAAGATTTTG 288998 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| | |||||| | ||||| ||| || ||||||||||||||| |||||| Sbjct 288997 TGGGTAGTAACAACATCAATCTTCTTCTTCCGAATGGTCAATTTGGTACTCGTA 288944 >seq12846 Length=30717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| | || ||||| || | ||||| | |||| |||| | || |||||| Sbjct 6304 GACTTCATTAACAAGGAACTTATTCTGTTTTCCATGGCTGATCTTCAAAGATCAATTCCT 6363 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | | ||||| |||| ||| ||| | ||||| | ||| | || || ||| Sbjct 6364 TCTGTGGTCGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTCTTCTGCGCCTTTAAGAGA 6423 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||| || ||| |||| || |||||||||||||||| ||| | | | Sbjct 6424 AATTTTGTAAAAGAGGCGAAAGTTTCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGCT 6483 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 || ||||| |||||| | |||| || | ||| | || | || ||||||||| | Sbjct 6484 TACCATCATGGTGAACAGAGTCTTATGAGTACCATTATTGGAATGGCTCAAGATTTTGTT 6543 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 | ||||| |||| | ||| || |||||||||||||| |||||| Sbjct 6544 GGCAGTAACAATATAAACGTTCTTCGTCCGAATGGTCAATTTGGAACTCGTA 6595 >seq12078 Length=35335 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 131865 TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGC 131924 ||||||||||||| |||| || || || || || || |||||| || || |||||| Sbjct 4467 TAGCTTTTGCTTGCATTGAGGGGATCTTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGT 4526 Query 131925 TTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATG 131984 | || ||||| || |||||||||||| | | || || || | || |||||| |||||| Sbjct 4527 TGAAAAAGCGCGGGTTGATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCGCGAGATG 4586 Query 131985 AAG 131987 ||| Sbjct 4587 AAG 4589 >seq7473 Length=70439 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 || |||| ||||| |||| || || || ||| | ||||| || || ||||||| Sbjct 2131 GAGATTTAAATGATGGAGATTATGTCCTTTTTAATCGTCAACCTAGTCTCCACAAAATGT 2190 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 2191 CAATCATGGGCCATAGAATCC--GGATTATGCCATACTCTACATTTCGTCTAAATTTGTC 2248 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| | ||||||||| |||||||||||||||||||| ||||| Sbjct 2249 TGTTACTTCACCATACAATGCTGGTTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 2308 Query 305485 ATCA 305488 |||| Sbjct 2309 ATCA 2312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185634514449968