Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3550 206 8e-49 seq31365 203 1e-47 seq5102 163 8e-36 seq695 116 1e-21 seq3386 104 7e-18 >seq3550 Length=137586 Score = 206 bits (228), Expect = 8e-49 Identities = 235/314 (75%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 20174 GGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATC 20233 || ||||| ||||| || ||||| |||||||| ||||||||||| ||||| || |||||| Sbjct 93201 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 93142 Query 20234 TTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 20293 || | || ||| |||||||||| |||||| |||| |||||| | ||||| | ||| Sbjct 93141 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 93082 Query 20294 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 20353 || ||||| || |||||| |||| || || || || ||| | || || || || ||| Sbjct 93081 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 93022 Query 20354 TTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 20413 ||||| |||||||| | | | || | | |||||||| ||| |||| ||||||| Sbjct 93021 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 92963 Query 20414 ATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTC 20473 ||| | || | |||||| | || | || || |||||||||| || |||||||||||| Sbjct 92962 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 92903 Query 20474 CCACTTGACCTTGC 20487 || || ||||| || Sbjct 92902 CCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 203 bits (224), Expect = 1e-47 Identities = 234/314 (75%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 20174 GGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATC 20233 || ||||| ||||| || ||||| |||||||| ||||||||||| |||| || |||||| Sbjct 470 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGATC 411 Query 20234 TTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 20293 || | || ||| |||||||||| |||||| |||| |||||| | ||||| | ||| Sbjct 410 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 351 Query 20294 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 20353 || ||||| || |||||| |||| || || || || ||| | || || || || ||| Sbjct 350 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 291 Query 20354 TTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 20413 ||||| |||||||| | | | || | | |||||||| ||| |||| ||||||| Sbjct 290 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 232 Query 20414 ATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTC 20473 ||| | || | |||||| | || | || || |||||||||| || |||||||||||| Sbjct 231 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 172 Query 20474 CCACTTGACCTTGC 20487 || || ||||| || Sbjct 171 CCTCTAGACCTAGC 158 >seq5102 Length=101622 Score = 163 bits (180), Expect = 8e-36 Identities = 268/382 (70%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| | || |||||||| ||||||| || | || ||| || | Sbjct 52310 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 52252 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 52251 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 52192 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| |||||||| || || || || ||| | |||| | Sbjct 52191 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 52132 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| ||||| || |||||||| || |||||||| Sbjct 52131 TTCTGCA--GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGATGAA 52074 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | | | | || || |||||| | |||| | | Sbjct 52073 TGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCT 52014 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | |||||||| | Sbjct 52013 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCT 51954 Query 19889 GTTGCCTACTCTGCTCCGGTTG 19910 ||||| || || ||||| |||| Sbjct 51953 GTTGCATATTCAGCTCCTGTTG 51932 >seq695 Length=285002 Score = 116 bits (128), Expect = 1e-21 Identities = 272/404 (67%), Gaps = 5/404 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| | || ||||| |||| | | | || |||||||| || || ||||| | Sbjct 41051 TTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATT 40992 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 || || || ||||| |||||||| || || || || | | | ||| | | | | Sbjct 40991 TCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTA-CTTCTGT 40933 Query 19718 -GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTA 19776 | || || | | ||| |||| || |||||||| || ||||||||||| | || Sbjct 40932 AGTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATA 40874 Query 19777 CAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACAT 19836 ||| || || || | | | | || || |||||| | |||| | | |||||| Sbjct 40873 CAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACAT 40814 Query 19837 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 || || |||| ||||||||| | | ||||| ||| ||||||||| | |||| || Sbjct 40813 AGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATA 40754 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || |||| ||||||| | || | || ||||| | |||| || | ||||| || | Sbjct 40753 TTCAACTCCTATTGCAGCTACTACTACTGT-TTTCTTGATCTATCCAATCGGTCAAGGGA 40695 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAAC 19999 || || |||| ||||||||| || ||||| | ||| |||||| Sbjct 40694 ATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 104 bits (114), Expect = 7e-18 Identities = 243/361 (67%), Gaps = 7/361 (2%) Strand=Plus/Minus Query 19865 CTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCG 19924 ||||| ||| | |||||| |||||| || || |||| |||||||| || | | Sbjct 67788 CTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACT 67729 Query 19925 GTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCC-GATGCTATGCCTTTGGGTAT 19983 || || | |||| || | | ||| || || || | | |||| ||||| | | || Sbjct 67728 GTTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAAT 67669 Query 19984 CTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCC 20043 ||| | ||| ||||| | |||| | |||||||| || ||||| | | || |||||||| Sbjct 67668 CTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAACACATCTTT---ATGCACCC 67612 Query 20044 GTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGG 20103 || |||||| | | | ||| ||||||||| || ||||||| || ||||| | Sbjct 67611 ATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGA 67552 Query 20104 TTCGCTTGTTACGTCCTCGCTTGTGCGTGAGA-CTACTGAACAGGAAAGTCAGAACTATG 20162 ||| | || || || | | ||| | || | | || || | ||| | || | | Sbjct 67551 TTCTTTGGTAACCTC-TAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAG 67493 Query 20163 GTTACAAGTTTGGGCAAGAAG-AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 |||||| || | ||||| | || | || ||||| ||| |||| ||||||||||| ||| Sbjct 67492 GTTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTT 67433 Query 20222 G 20222 | Sbjct 67432 G 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148691852203104