Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3550 208 2e-49 seq31365 205 3e-48 seq5102 163 8e-36 seq695 113 1e-20 >seq3550 Length=137586 Score = 208 bits (230), Expect = 2e-49 Identities = 236/315 (75%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 29302 GGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATC 29361 || ||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || |||||| Sbjct 93201 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 93142 Query 29362 TTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 29421 || | |||||| |||||| ||| |||||| |||| |||||| | ||||| | ||| Sbjct 93141 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 93082 Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || ||||| || |||||| |||| || || || || ||| | || || || || ||| Sbjct 93081 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 93022 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 || || |||||||| | | | || | | |||||||| |||||||| |||||||| Sbjct 93021 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTGAT 92963 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 || | || | |||||| | || | ||||| |||||||| | ||| |||||||||||| Sbjct 92962 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 92903 Query 29602 CCACTTGATCTGGCT 29616 || || || || ||| Sbjct 92902 CCTCTAGACCTAGCT 92888 >seq31365 Length=1132 Score = 205 bits (226), Expect = 3e-48 Identities = 235/315 (75%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 29302 GGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATC 29361 || ||||| ||||| |||||||| |||||||| ||||| ||||| |||| || |||||| Sbjct 470 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGATC 411 Query 29362 TTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 29421 || | |||||| |||||| ||| |||||| |||| |||||| | ||||| | ||| Sbjct 410 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 351 Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || ||||| || |||||| |||| || || || || ||| | || || || || ||| Sbjct 350 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 291 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 || || |||||||| | | | || | | |||||||| |||||||| |||||||| Sbjct 290 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTGAT 232 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 || | || | |||||| | || | ||||| |||||||| | ||| |||||||||||| Sbjct 231 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 172 Query 29602 CCACTTGATCTGGCT 29616 || || || || ||| Sbjct 171 CCTCTAGACCTAGCT 157 >seq5102 Length=101622 Score = 163 bits (180), Expect = 8e-36 Identities = 267/380 (70%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| | || |||||||| ||||||| || | || ||| || | Sbjct 52310 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 52252 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 52251 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 52192 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || || |||||||| || || || || ||| | | || | Sbjct 52191 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 52132 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| ||||| || |||||||| || |||||||| Sbjct 52131 TTCTGCA--GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGATGAA 52074 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | | | || || |||||| | |||| || | Sbjct 52073 TGGTTATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCT 52014 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || ||||| | Sbjct 52013 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCT 51954 Query 29017 GTCGCATACTCAGCTCCCGT 29036 || ||||| |||||||| || Sbjct 51953 GTTGCATATTCAGCTCCTGT 51934 >seq695 Length=285002 Score = 113 bits (124), Expect = 1e-20 Identities = 269/403 (67%), Gaps = 3/403 (1%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| | || ||||| || | | | | || |||||||| || || |||||| | Sbjct 41051 TTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATT 40992 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||||| ||| || || |||||||| || || || || | | | | | | | | | Sbjct 40991 TCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTA-CTTCTGT 40933 Query 28846 -GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTA 28904 | || || | | ||| |||| || |||||||| || ||||||||||| | || Sbjct 40932 AGTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATA 40874 Query 28905 CAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACAT 28964 ||| || || || | | | | || || |||||| | |||| || | |||||| Sbjct 40873 CAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACAT 40814 Query 28965 GGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATA 29024 || || |||| ||||||||| | | ||||| ||| || |||||| | | ||||| Sbjct 40813 AGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATA 40754 Query 29025 CTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTC 29084 ||| |||| | ||||| | || | |||||| | |||| ||| |||||||||| Sbjct 40753 TTCAACTCCTATTGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAA 40694 Query 29085 TTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 |||| || | |||||||| || || || | || |||||| Sbjct 40693 TTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146530642714848