Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq5102 233 5e-57 seq3550 196 1e-45 seq31365 192 2e-44 seq695 154 4e-33 seq3386 125 2e-24 >seq5102 Length=101622 Score = 233 bits (258), Expect = 5e-57 Identities = 302/410 (74%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| ||||| |||||||| || Sbjct 52337 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 52278 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 52277 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 52220 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||||| Sbjct 52219 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 52160 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 52159 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 52102 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 || |||||||| || ||||||||||| | ||||| || || || | | | | Sbjct 52101 GATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAAT 52042 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || || |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 52041 TGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 51982 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTG 19129 || || || |||||||||||||| |||||| || ||||||||||||| Sbjct 51981 CCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTG 51932 >seq3550 Length=137586 Score = 196 bits (216), Expect = 1e-45 Identities = 229/308 (74%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 19393 GGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATT 19452 || ||||| ||||| |||||||| || || ||||||||||| |||||||| || | || Sbjct 93201 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 93142 Query 19453 TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCT 19512 || | ||| || ||||||||| |||||| |||||||||| || ||||||| ||| Sbjct 93141 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 93082 Query 19513 GTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGC 19572 || || || || ||||| | || | || | ||||||||| | |||||| | ||||| Sbjct 93081 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 93022 Query 19573 TTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 19632 || || |||||||| | | |||| | | |||||||| ||| |||| ||||||| Sbjct 93021 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 92963 Query 19633 ATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTC 19692 ||| | || | ||||||| | || | || || ||||| |||| ||| |||||||||||| Sbjct 92962 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 92903 Query 19693 CCACTTGA 19700 || || || Sbjct 92902 CCTCTAGA 92895 >seq31365 Length=1132 Score = 192 bits (212), Expect = 2e-44 Identities = 228/308 (74%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 19393 GGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATT 19452 || ||||| ||||| |||||||| || || ||||||||||| ||||||| || | || Sbjct 470 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGATC 411 Query 19453 TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCT 19512 || | ||| || ||||||||| |||||| |||||||||| || ||||||| ||| Sbjct 410 TTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGCCC 351 Query 19513 GTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGC 19572 || || || || ||||| | || | || | ||||||||| | |||||| | ||||| Sbjct 350 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATGGT 291 Query 19573 TTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 19632 || || |||||||| | | |||| | | |||||||| ||| |||| ||||||| Sbjct 290 TTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTGAT 232 Query 19633 ATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTC 19692 ||| | || | ||||||| | || | || || ||||| |||| ||| |||||||||||| Sbjct 231 ATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACTTC 172 Query 19693 CCACTTGA 19700 || || || Sbjct 171 CCTCTAGA 164 >seq695 Length=285002 Score = 154 bits (170), Expect = 4e-33 Identities = 320/470 (68%), Gaps = 5/470 (1%) Strand=Plus/Minus Query 18751 AACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTAC 18809 || |||||||||||| | ||||||| | ||||| || | || ||| | || || Sbjct 41117 AATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGATCCC-TACCTTATTGACCGCAAC 41059 Query 18810 TATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGA 18869 | ||| || ||||| | ||| |||||||| | || |||| |||||||| || || || Sbjct 41058 TTTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGA 40999 Query 18870 GCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 18929 ||| || | || ||| ||||| |||||||| || || || || | | | ||| | Sbjct 40998 ACCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTA- 40940 Query 18930 CAGCAAT-GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 18988 | | | | || || | | ||| |||| || |||||||| || ||||||||| Sbjct 40939 CTTCTGTAGTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAAT 40880 Query 18989 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATG 19048 || | ||||| || || || | | | | || || |||||| | |||| || | Sbjct 40879 GG-TATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTT 40821 Query 19049 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTG 19108 |||||| || || |||| ||||||||| | | ||||| |||| |||||||||| | Sbjct 40820 GTTACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTA 40761 Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTC 19168 |||| || ||| ||||| |||| || | || | || ||| | |||||||| | |||| Sbjct 40760 TTGCATATTCAACTCCTATTGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTC 40701 Query 19169 AAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAAC 19218 |||| ||| || | ||||||||| || || || ||| |||||| Sbjct 40700 AAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 125 bits (138), Expect = 2e-24 Identities = 248/361 (69%), Gaps = 7/361 (2%) Strand=Plus/Minus Query 19084 CTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCG 19143 ||||| |||||| |||||| |||||| || ||| |||||||||| || || | | Sbjct 67788 CTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACT 67729 Query 19144 GTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGC-GACGCTATGCCTTTGGGTAT 19202 || ||| | |||||||| | | |||||| ||| | || | ||||| | | || Sbjct 67728 GTTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAAT 67669 Query 19203 TAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCC 19262 || ||| ||||| | |||| |||||||||||||||||| ||||| | |||||||| Sbjct 67668 CTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAAC---ACATCTTTATGCACCC 67612 Query 19263 GTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGG 19322 || |||||| | | | ||| |||| |||| | || ||||| | || ||||| | Sbjct 67611 ATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGA 67552 Query 19323 TTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATG 19381 ||| | || || | || | ||| | | |||| || || | | || | || | | Sbjct 67551 TTCTTTGGTAACCT-CTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAG 67493 Query 19382 GCTACAAGTTTGGGCAAGA-AGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 | |||| || | ||||| ||| | |||||||| || | ||||||||||| |||||| Sbjct 67492 GTTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTT 67433 Query 19441 G 19441 | Sbjct 67432 G 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141018919108704