Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1278 95.1 1e-14
seq9733 87.8 2e-12
seq226 87.8 2e-12
seq3967 86.0 6e-12
seq3059 86.0 6e-12
seq1833 84.2 2e-11
seq287 84.2 2e-11
>seq1278
Length=225562
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
|||||||||||| | | | ||||| ||||| |||||||| ||| || |||||| ||
Sbjct 157832 CAAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGACCGTC 157773
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||||||||||| |||| |||| ||||| || || || || || || ||||| || ||
Sbjct 157772 CTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTC 157713
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | || | || |||| ||| ||||| | || | ||
Sbjct 157712 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 157653
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| || ||||| ||||| | ||| ||||||||| ||
Sbjct 157652 CTTGCCCGTCAGGGTTTTCACGAAGATCTGCATGCCT 157616
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || || |||||||||||| || |||||| || |||||||| || ||||
Sbjct 157359 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTTCCGG 157300
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| |||| ||||||||||| || ||||| || ||||| || || || || || |
Sbjct 157299 CAAAGATAAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTCGCCTTGA 157240
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| ||| || |||| || | || || || ||||| || |
Sbjct 157239 CGTTATCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 157180
Query 132108 TTATGAAAATCTGCAT 132123
| | ||| ||||||||
Sbjct 157179 TAACGAAGATCTGCAT 157164
>seq9733
Length=51005
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || || |||||||||||| || |||||| || ||||||||||| ||||
Sbjct 37686 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGG 37745
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| ||||| ||||| |||||||| || ||||| || || || || || |
Sbjct 37746 CGAAGATGAGACGTTGTTGGTCTGGAGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTGA 37805
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| ||| || |||| || | || || || ||||| || |
Sbjct 37806 CGTTATCAATGGTGTCGGAGCTCTCGACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 37865
Query 132108 TTATGAAAATCTGCAT 132123
| | ||| ||||||||
Sbjct 37866 TAACGAAGATCTGCAT 37881
>seq226
Length=390889
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967
||||| |||||||| | | | ||||| ||||||||||| ||||| ||| | ||| |
Sbjct 303751 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCT-AGGGTCCTGCC 303693
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| |||||||| || | | | |||| | ||| || || || || ||||| || ||
Sbjct 303692 ATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGTGGGATGCCCTCCTT 303633
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| ||| || |||| | || | || |||| |||||| || | || |
Sbjct 303632 GTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCGGAGCTCTCCACCTCAAGGGTGAT 303573
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || ||||| |||||||| | || |||||||||
Sbjct 303572 TGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATG 303536
>seq3967
Length=121343
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| |||||||| | | | ||||| ||||| ||||||||||| || |||||| ||
Sbjct 66445 CAAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTACGGCCGTC 66386
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||||||||||| || | |||| ||||| || || || || || || ||||| || ||
Sbjct 66385 CTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 66326
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | || | || |||| ||| ||||| | || | ||
Sbjct 66325 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 66266
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
||| || ||||| ||||| | ||| || |||||| ||
Sbjct 66265 TTTGCCGGTCAGGGTTTTCACGAAGATTTGCATGCCT 66229
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || || |||||||| ||| || |||||| || ||||||||||| ||||
Sbjct 65972 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGTTTTCCGG 65913
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| ||||||||||| || ||||| || ||||| || || || || || |
Sbjct 65912 CGAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCTTGGATCTTCGCCTTGA 65853
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| ||| || |||| || | || || || ||||| || |
Sbjct 65852 CATTATCAATGGTGTCGGAGCTCTCGACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 65793
Query 132108 TTATGAAAATCTGCAT 132123
| | ||| ||||||||
Sbjct 65792 TAACGAAGATCTGCAT 65777
>seq3059
Length=143113
Score = 86.0 bits (94), Expect = 6e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || ||||| || ||||| ||| || ||| || ||| || || ||||| |||| |
Sbjct 2011 GATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCCAGTTGTTTGCCGGCA 2070
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | ||||| ||||| ||||| |||||||||||||| ||| || ||| |
Sbjct 2071 AAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTGACA 2130
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || |||| || ||||| | || | || || || ||||| |||||
Sbjct 2131 TTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTC 2190
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 2191 ACGAATATCTGCATG 2205
>seq1833
Length=187927
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || || |||||||| ||| || ||| || || || |||||||| ||||
Sbjct 43741 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCTAGCTGTTTTCCGG 43800
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| |||| |||||||| || || || || || ||||| || || || || || |
Sbjct 43801 CAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGA 43860
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | ||||||| ||| ||||||| || | || || || ||||| || |
Sbjct 43861 CGTTGTCGATGGTATCGGAACTCTCGACTTCGAGGGTGATTGTCTTTCCGGTCAGGGTCT 43920
Query 132108 TTATGAAAATCTGCAT 132123
| | ||||||||||||
Sbjct 43921 TGACGAAAATCTGCAT 43936
>seq287
Length=655510
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| | ||| || |||||||||||| || ||||
Sbjct 104045 GACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCTTCGAGCTGCTTGCCGGCG 103986
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| ||||| || || ||||| || ||||||||||| || ||| || || |
Sbjct 103985 AAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATCTTAGCCTTGACA 103926
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || |||| | ||| || || | || | || || || || || |||||
Sbjct 103925 TTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTG 103866
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 103865 ACGAAGATCTGCAT 103852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476149554391680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |