Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1278 95.1 1e-14 seq9733 87.8 2e-12 seq226 87.8 2e-12 seq3967 86.0 6e-12 seq3059 86.0 6e-12 seq1833 84.2 2e-11 seq287 84.2 2e-11 >seq1278 Length=225562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | | ||||| ||||| |||||||| ||| || |||||| || Sbjct 157832 CAAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGACCGTC 157773 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||||||| |||| |||| ||||| || || || || || || ||||| || || Sbjct 157772 CTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTC 157713 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | || | || |||| ||| ||||| | || | || Sbjct 157712 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 157653 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| ||||| | ||| ||||||||| || Sbjct 157652 CTTGCCCGTCAGGGTTTTCACGAAGATCTGCATGCCT 157616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 157359 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTTCCGG 157300 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| ||||||||||| || ||||| || ||||| || || || || || | Sbjct 157299 CAAAGATAAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTCGCCTTGA 157240 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| || | || || || ||||| || | Sbjct 157239 CGTTATCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 157180 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 157179 TAACGAAGATCTGCAT 157164 >seq9733 Length=51005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| || |||||| || ||||||||||| |||| Sbjct 37686 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGG 37745 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||| ||||| |||||||| || ||||| || || || || || | Sbjct 37746 CGAAGATGAGACGTTGTTGGTCTGGAGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTGA 37805 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| || | || || || ||||| || | Sbjct 37806 CGTTATCAATGGTGTCGGAGCTCTCGACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 37865 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 37866 TAACGAAGATCTGCAT 37881 >seq226 Length=390889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| |||||||| | | | ||||| ||||||||||| ||||| ||| | ||| | Sbjct 303751 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCT-AGGGTCCTGCC 303693 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| |||||||| || | | | |||| | ||| || || || || ||||| || || Sbjct 303692 ATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGTGGGATGCCCTCCTT 303633 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||| || |||| | || | || |||| |||||| || | || | Sbjct 303632 GTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCGGAGCTCTCCACCTCAAGGGTGAT 303573 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| |||||||| | || ||||||||| Sbjct 303572 TGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATG 303536 >seq3967 Length=121343 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | | | ||||| ||||| ||||||||||| || |||||| || Sbjct 66445 CAAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTACGGCCGTC 66386 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||||||| || | |||| ||||| || || || || || || ||||| || || Sbjct 66385 CTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 66326 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | || | || |||| ||| ||||| | || | || Sbjct 66325 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 66266 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| || ||||| ||||| | ||| || |||||| || Sbjct 66265 TTTGCCGGTCAGGGTTTTCACGAAGATTTGCATGCCT 66229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||| ||| || |||||| || ||||||||||| |||| Sbjct 65972 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGTTTTCCGG 65913 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||||||||| || ||||| || ||||| || || || || || | Sbjct 65912 CGAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCTTGGATCTTCGCCTTGA 65853 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| || | || || || ||||| || | Sbjct 65852 CATTATCAATGGTGTCGGAGCTCTCGACCTCGAGGGTGATTGTCTTGCCGGTCAGGGTCT 65793 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 65792 TAACGAAGATCTGCAT 65777 >seq3059 Length=143113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| || ||||| ||| || ||| || ||| || || ||||| |||| | Sbjct 2011 GATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCCAGTTGTTTGCCGGCA 2070 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| ||||| ||||| |||||||||||||| ||| || ||| | Sbjct 2071 AAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTGACA 2130 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||||| | || | || || || ||||| ||||| Sbjct 2131 TTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTC 2190 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 2191 ACGAATATCTGCATG 2205 >seq1833 Length=187927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||| ||| || ||| || || || |||||||| |||| Sbjct 43741 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCTAGCTGTTTTCCGG 43800 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| |||||||| || || || || || ||||| || || || || || | Sbjct 43801 CAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGA 43860 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||||| ||| ||||||| || | || || || ||||| || | Sbjct 43861 CGTTGTCGATGGTATCGGAACTCTCGACTTCGAGGGTGATTGTCTTTCCGGTCAGGGTCT 43920 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||||||||| Sbjct 43921 TGACGAAAATCTGCAT 43936 >seq287 Length=655510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 104045 GACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCTTCGAGCTGCTTGCCGGCG 103986 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || || ||||| || ||||||||||| || ||| || || | Sbjct 103985 AAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATCTTAGCCTTGACA 103926 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| || || | || | || || || || || ||||| Sbjct 103925 TTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTG 103866 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 103865 ACGAAGATCTGCAT 103852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476149554391680