Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3059 87.8 2e-12 seq7474 84.2 2e-11 seq2335 82.4 7e-11 seq10 82.4 7e-11 >seq3059 Length=143113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | ||||| || | ||||| | ||||||||| | Sbjct 2205 CATGCAGATATTCGTGAAAACCCTGACCGGCAAGACTATCACTCTTGAAGTCGAAAGCTC 2146 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || ||| || ||| |||||||| || || || || ||||| Sbjct 2145 CGACACCATAGATAATGTCAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCCGGATCA 2086 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | | |||||||||||| || |||| | | | | ||||||||| Sbjct 2085 GCAGCGATTGATCTTTGCCGGCAAACAACTGGAGGATGGTCGCACCTTGGCCGATTACAA 2026 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| ||||| ||||| || Sbjct 2025 TATCCAAAAGGAATCGAC 2008 >seq7474 Length=135391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || ||||| | ||||| | ||||| ||| | Sbjct 126906 ATGCAGATCTTTGTGAAGACTCTTACTGGAAAGACCATCACTTTGGAAGTTGAAAGCTCA 126965 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||| || ||||| |||||||| || || || ||| Sbjct 126966 GACACAATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCAG 127025 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||||||||||| | ||||| ||||| ||||||| || | || || || || || Sbjct 127026 CAAAGACTCATTTTTGCTGGCAAGCAACTTGAAGATGGAAG-GACGTTGGCTGACTATAA 127084 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| ||||| || || || |||| || ||||| Sbjct 127085 TATCCAAAAGGAGTCGACTCTTCACTTGGTGTT 127117 >seq2335 Length=171082 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| ||||| | ||||| || | || || |||| ||||| Sbjct 22990 AAGATGCAAATCTTTGTGAAAACCCTTACCGGCAAGACCATAACTCTCGAGGTCGAGAGT 23049 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||||| ||||| | || || || || || || || ||||| || ||||| Sbjct 23050 TCCGATACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCACCCGAC 23109 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| | ||||| | || ||| ||||| |||||||| | | ||| || || ||| Sbjct 23110 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTCGAACCCTCGCTGACTAC 23169 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 23170 AACATCCAGAAAGAATCCAC 23189 >seq10 Length=577822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| ||||| ||| | ||||| | || || ||| Sbjct 562176 ATGCAGATCTTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTCG 562117 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| ||||| || || || || || |||||| Sbjct 562116 GATACGATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCAG 562057 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||| || || | | ||||||||| | || |||| || | | | ||| ||||| || Sbjct 562056 CAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTT-AGCTGATTATAA 561998 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||||| || ||| |||| Sbjct 561997 CATTCAAAAAGAGTCTACCCTTCA 561974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444663281564160