Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9751 354 1e-91 seq12078 318 8e-81 seq10024 315 1e-79 >seq9751 Length=50749 Score = 354 bits (392), Expect = 1e-91 Identities = 398/523 (76%), Gaps = 12/523 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||||||||||| |||| | |||||||||||||| | |||| |||| || || ||| Sbjct 48745 TGTTCCCCATCCAATACCCACAAGTATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTT 48803 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGA 1455871 |||||||||||||||||||| || |||| | | ||| |||||| | || | || Sbjct 48804 TGGACCGCCGAGGAGGTCGATCTGTCATCCGATCTCCGTC-ACTGGGAAACACTCACCGC 48862 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||| |||||||| ||||||| || || || ||||||| |||||||| ||| || |||| Sbjct 48863 CGATGAGCGCCACTTCATCACTCATGTTCTTGCCTTTT-TCGCCGCCTCCGACGGAATCG 48921 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | || ||||| |||| || |||||||||||||||||| | | ||||| || | Sbjct 48922 TCCTTGAAAACCTCGCCGTTCGGTTTATGAAAGAGGTCCAAATCTCCGAGGCGCGGGCTT 48981 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || || || || |||||||| | ||| ||||| | | Sbjct 48982 TCTACGGTTTCCAAATCGCTATTGAGAATATACACTCTGAGATGTACAGTCTCCTTTTGG 49041 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | |||||| |||||||| | | || ||| || ||||| |||||||| || ||||||| Sbjct 49042 AGACCTACATCAAGGACTCCGATGAAAAGAGCCGACTCTTCCGCGCCATTGAAACGGTGC 49101 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 ||| ||| ||||||||||| ||||| ||||| ||||||||| ||||| || | Sbjct 49102 CGTGTGTGGCTAAAAAGGCCGAGTGGGCCATGAAATGGATCAAC--GGAGG----AGAAA 49155 Query 1456172 CTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 |||| ||||||||| | ||| |||||| |||||||||| ||||||||||| || |||| Sbjct 49156 CTTTCGCCGAGCGGTTGATCGCCTTTGCTTGCGTCGAGGGGATCTTTTTCTCCGGAAGTT 49215 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||||||| || ||| | || |||||||| | |||||||| Sbjct 49216 TCTGCGCCATATTCTGGTTGAAAAAGCGCGGTTTAATGCCCGG 49258 >seq12078 Length=35335 Score = 318 bits (352), Expect = 8e-81 Identities = 411/560 (73%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| ||| ||||| |||| ||| |||| || |||| |||| | Sbjct 4001 GAGCCACTGCTGACCGAGAACCCAGACCGGTTTTGTATGTTTCCGATCCAATACCCACAA 4060 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||||||||||| | |||| |||| || ||||||||||| |||||||| || || | Sbjct 4061 GTATGGGAAATGTACAAGAAAG-CCGAAGCGTCCTTTTGGACTGCCGAGGAAGTTGATTT 4119 Query 1455836 CGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 |||| | | ||| |||||| | || | || |||||||||||| ||||||| | Sbjct 4120 GTCTTCCGATCTCCGTC-ACTGGGAAACTCTCACCGCCGACGAGCGCCACTTCATCACTC 4178 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||||||| || ||| ||||| || || || || || |||| ||| Sbjct 4179 ACGTTCTCGCCTTTTTT-GCAGCCTCTGATGGTATTGTCCTTGAAAATCTTGCCGTCCGG 4237 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || ||||||||||||||| | | ||||| ||| || ||||| |||||||||||||| Sbjct 4238 TTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCCATT 4297 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 ||||| |||||||| || | ||| || || |||| || ||| |||| || | | Sbjct 4298 GAAAATATCCACTCCGAGATGTACAGTCTGCTCCTCGAGACTTACATCAAAGATTCCGAG 4357 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| | |||||| || ||| | || ||||| |||| ||| ||||||||||| Sbjct 4358 GAAAAGAGTCGCCTCTTCCGTGCCGTTGAAACGGTACCGTGCGTGGCTAAAAAGGCCGAG 4417 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGC 1456193 ||||| ||||| ||||||||| ||| || ||||| ||||||||| | | | Sbjct 4418 TGGGCTATGAAATGGATCAAC------GGCGGAGAAACTTTCGCCGAGCGGTTGATAGCT 4471 Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| || | ||||| ||||||||||| || |||||||||||||| |||||| | || Sbjct 4472 TTTGCTTGCATTGAGGGGATCTTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGTTGAAA 4531 Query 1456253 AAGCGCGGCCTCATGCCCGG 1456272 |||||||| | ||||| || Sbjct 4532 AAGCGCGGGTTGATGCCTGG 4551 >seq10024 Length=53621 Score = 315 bits (348), Expect = 1e-79 Identities = 386/522 (74%), Gaps = 10/522 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || |||| |||| | | | |||||||||||| | |||| |||| || || ||| Sbjct 14424 TGTTTCCGATCCAATACCCACAGGTTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTT 14482 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| |||||||| ||||| | |||| ||||||| |||| | || | Sbjct 14483 TGGACTGCCGAGGAAGTCGATTTGTCTTCCGATCTCCCACACTGGGAAACGCTCACCGCC 14542 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 ||||||||||| ||||||| ||||| |||||||||||| || ||| |||||| ||||| Sbjct 14543 GACGAGCGCCACTTCATCACACACGTTCTCGCCTTTTTT-GCTGCCTCCGATGGTATCGT 14601 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 || || || |||| ||| || ||||||||||||||| | | ||||| ||| || Sbjct 14602 CCTTGAAAATCTTGCCGTCCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTT 14661 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 || || |||||||||||||| ||||| |||||||| || | ||| || || |||| Sbjct 14662 CTATGGTTTCCAGATCGCCATTGAAAATATCCACTCCGAGATGTACAGTCTGCTTCTCGA 14721 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 || ||| |||| || ||| || ||| || |||||| || ||||| || |||||||| Sbjct 14722 GACTTACATCAAAGATTCGGAGGAAAAGAGCCGCCTCTTCCGTGCCATTGAAACGGTGCC 14781 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 || ||| ||||| ||||| ||||| ||||| ||||||||| ||| || || Sbjct 14782 GTGCGTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCAAC------GGCGGAGAAAC 14835 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| ||||||||| | ||| ||||| || | ||||| || |||||||| || ||||| Sbjct 14836 TTTCGCCGAGCGGTTGATCGCTTTTGCTTGCATTGAGGGGATATTTTTCTCTGGAAGTTT 14895 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||||||| |||||| | || |||||||| | ||||| || Sbjct 14896 CTGCGCCATATTTTGGTTGAAAAAGCGCGGGTTAATGCCTGG 14937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170337339977056