Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10024 190 2e-43 seq12078 178 1e-39 seq9751 141 7e-29 seq815 96.9 3e-15 >seq10024 Length=53621 Score = 190 bits (210), Expect = 2e-43 Identities = 397/584 (68%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | | | ||| |||||||||| ||||| | ||||| |||| Sbjct 14424 TGTTTCCGATCCAATACCCACAGGTTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 14483 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || ||||| |||||| || || | |||| ||| | | | | Sbjct 14484 GGACTGCCGAGGAAGTCGATTTGTCTTCCGATCTCCCACACTGGGAAACGCTCACCGCCG 14543 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || || || | ||| | || ||||||||||| ||| || || ||| Sbjct 14544 ACGAGCGCCACTTCATCACACACGTTCTCGCCTTTTTTGCTGCCTCCGATGGTATCGTCC 14603 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 ||||||| | | ||||| | |||| || ||| | | || || || ||| | Sbjct 14604 TTGAAAATCTTGCCGTCCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTCT 14663 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| || || || ||||| |||||||| || || || ||||||||||| || | || | Sbjct 14664 ATGGTTTCCAGATCGCCATTGAAAATATCCACTCCGAGATGTACAGTCTGCTTCTCGAGA 14723 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-T 44065 | |||||||||||| | | || ||| || | || ||| || ||||| || || | Sbjct 14724 CTTACATCAAAGATTCGGAGGAAAAGAGCCGCCTCTTCCGTGCCATTGAAACGGTGCCGT 14783 Query 44066 GCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 ||| |||| ||||| || ||||| | |||||||| || || |||| | Sbjct 14784 GCGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCAACGGCGGAGAAACTTTCG 14840 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTG--TGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 || || | |||| ||||| ||| | || || || || || || ||| || || Sbjct 14841 CCGAGCGGTTGATCGCTTTTGC--TTGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTG 14898 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || ||||||||||||| || || || || || |||||||| || || || || ||||||| Sbjct 14899 CG-CCATATTTTGGTTGAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCCAATGAGT 14957 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| || ||||||||| | || |||||||||||||||||| Sbjct 14958 TAATCTCGCGAGATGAAGGCCTCCACTGCGATTTTGCTTGCTTG 15001 >seq12078 Length=35335 Score = 178 bits (196), Expect = 1e-39 Identities = 400/588 (68%), Gaps = 20/588 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | | ||||| |||||||||| ||||| | ||||| |||| Sbjct 4038 TGTTTCCGATCCAATACCCACAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCCTTTT 4097 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| || || |||||||||||| || || || | ||| | ||| | | ||| Sbjct 4098 GGACTGCCGAGGAAGTTGATTTGTCTTCCGATCTCCGTCAC-TGGGAA---ACTCTCACC 4153 Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | || || || || || ||| | || |||||||| || || || || Sbjct 4154 GCCGACGAGCGCCACTTCATCACTCACGTTCTCGCCTTTTTTGCAGCCTCTGATGGTATT 4213 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| ||||||| | | ||||| | |||| || ||| | | || || || | Sbjct 4214 GTCCTTGAAAATCTTGCCGTCCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCT 4273 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| |||||||| || || || ||||||||||| || | Sbjct 4274 TTCTACGGTTTCCAGATCGCCATTGAAAATATCCACTCCGAGATGTACAGTCTGCTCCTC 4333 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || |||||||||||| | || ||| ||| | || ||| | ||||| ||| Sbjct 4334 GAGACTTACATCAAAGATTCCGAGGAAAAGAGTCGCCTCTTCCGTGCCGTTGAAACGGTA 4393 Query 44063 CC-TGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || |||| |||| || || || ||||| | |||||||| || || || Sbjct 4394 CCGTGCGTGGCTAAA---AAGGCCGAGTGGGCTATGAAATGGATCAACGGCGGAGAAACT 4450 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTG--TGGAAGGCATTTTCTTTTCAGGATCGT 44177 || | || || | | || ||||| ||| | || || || || || || ||| | Sbjct 4451 TTCGCCGAGCGGTTGATAGCTTTTGC--TTGCATTGAGGGGATCTTTTTCTCTGGAAGTT 4508 Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | |||| ||||||||||||| || || || || ||||||||||| || || || ||||| Sbjct 4509 TCTGCG-CCATATTTTGGTTGAAAAAGCGCGGGTTGATGCCTGGATTAACTTTCTCAAAC 4567 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||||| || ||||||||| | || |||||||||||||||||| Sbjct 4568 GAGTTAATCTCGCGAGATGAAGGCCTCCACTGCGATTTTGCTTGCTTG 4615 >seq9751 Length=50749 Score = 141 bits (156), Expect = 7e-29 Identities = 384/584 (66%), Gaps = 8/584 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || || ||||| | | ||||| |||||||||| ||||| | ||||| |||| Sbjct 48745 TGTTCCCCATCCAATACCCACAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 48804 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || || || ||| || | || | || ||| || | | | Sbjct 48805 GGACCGCCGAGGAGGTCGATCTGTCATCCGATCTCCGTCACTGGGAAACACTCACCGCCG 48864 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || || || || ||| | || ||||| || || |||||| || ||| Sbjct 48865 ATGAGCGCCACTTCATCACTCATGTTCTTGCCTTTTTCGCCGCCTCCGACGGAATCGTCC 48924 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||||| | | ||||||| | |||| || ||| | | || || || ||| | Sbjct 48925 TTGAAAACCTCGCCGTTCGGTTTATGAAAGAGGTCCAAATCTCCGAGGCGCGGGCTTTCT 48984 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || || ||||| || || || ||||| || || || ||||||||||| || | || | Sbjct 48985 ACGGTTTCCAAATCGCTATTGAGAATATACACTCTGAGATGTACAGTCTCCTTTTGGAGA 49044 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-- 44064 | |||||||| || | || ||| ||| | || || || ||||| || || Sbjct 49045 CCTACATCAAGGACTCCGATGAAAAGAGCCGACTCTTCCGCGCCATTGAAACGGTGCCGT 49104 Query 44065 -TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 || | |||| || || || |||||| | |||||||| || | || |||| | Sbjct 49105 GTGTGGCTAAA---AAGGCCGAGTGGGCCATGAAATGGATCAACGGAGGAGAAACTTTCG 49161 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCG 44182 || || | |||| ||||| || || || || || || || ||| || |||| Sbjct 49162 CCGAGCGGTTGATCGCCTTTGCTTGCGTCGAGGGGATCTTTTTCTCCGGAAGTTTCTGCG 49221 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||||| || || || ||||| ||||| || || || || ||||| |||||| Sbjct 49222 -CCATATTCTGGTTGAAAAAGCGCGGTTTAATGCCCGGATTAACTTTCTCAAACGAGTTA 49280 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 ||| || || || || | || || ||||| ||||||||||| Sbjct 49281 ATATCGCGAGACGAGGGTCTCCACTGTGATTTCGCTTGCTTGTT 49324 >seq815 Length=266903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||| || | ||||||||||||||||| | ||| |||||||||| | || || || Sbjct 198724 AATGGGGAGTTATCATGTCAATTGTATCAGCGCTCATGTGACATGGGCTTGGGTGTGCCA 198783 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 |||||||| || ||||||||| ||||||| |||||||| |||||| Sbjct 198784 TTTAACATTGCATCTTATGCTCTCCTCACGTGCATGATTGCTCACGTT 198831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397080648515440