Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq461 107 2e-18 seq4303 98.7 1e-15 seq17672 96.9 4e-15 seq1980 84.2 3e-11 seq2164 82.4 9e-11 >seq461 Length=318114 Score = 107 bits (118), Expect = 2e-18 Identities = 251/371 (68%), Gaps = 16/371 (4%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| ||||| || ||| | ||| || || || Sbjct 36344 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATGTCAGCCCTGTTAGTTGCAGC 36285 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 | || | || ||||| |||| |||||||||||||| |||||||| || ||||| Sbjct 36284 AACTACGATAATACCCGT---GTTACCCTCAAAGCCATCCATTTCAGTCAAAAGCTGATT 36228 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACC 14238 | ||||| || | ||||||||| | | |||||| | || || | || Sbjct 36227 AAGAGTTTGCTCCCTCTCATCATTCCCTCCACCGATACCAGTTCCTCTTTGTCGT---CC 36171 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA-CTTCAA 14297 || || ||||||||||| | || || |||||||| |||||| ||| ||| || Sbjct 36170 AACAGCATCAATTTCATCCACAAATACAATACATGGGGCATTTTCCTTGGCCTTCTTGAA 36111 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | | ||| || |||| |||||||||||| |||||||| || ||||| | || | | Sbjct 36110 A-AGATCACGAACTCGAGAGGCACCGACACCAACAAACATTTCAACAAACTCGGAACCTG 36052 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 || || | || ||| || || || |||||| || || || ||| || |||||||| Sbjct 36051 AA-ATGGAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTGGCAAGAAGGGTCTTT 35993 Query 14417 CCCGTCCCTGG 14427 || || || || Sbjct 35992 CCAGTTCCAGG 35982 >seq4303 Length=114645 Score = 98.7 bits (108), Expect = 1e-15 Identities = 249/371 (67%), Gaps = 16/371 (4%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | ||||| ||||| || || | ||| || || || Sbjct 59694 ATCAAACCGTCCTGGCCTCAATAGGGCAGAATCAAGAATGTCGGCCCTGTTGGTTGCTGC 59753 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || | ||| || || |||| || || |||||||| || ||||| || || || Sbjct 59754 AATCACGATGATACCTGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 59810 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACC 14238 || ||||| || | ||||||||| | | |||||| | || || | || Sbjct 59811 GAGAGTTTGCTCCCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGT---CC 59867 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAA 14297 || || ||||||||||| | || ||||| ||||| ||| | | || | ||| || Sbjct 59868 AACAGCATCAATTTCATCCACAAAGACGATGCATGGGGCATTCTCCTTGGCCTTCTTGAA 59927 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | | ||| || |||| |||||||||||| |||||||| || ||||| | || | | Sbjct 59928 A-AGATCACGAACTCGAGAGGCACCGACACCAACAAACATTTCAACAAACTCGGAACCTG 59986 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 || || | || ||| || || || |||||| || || || |||||| |||||||| Sbjct 59987 AA-ATAGAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTGGCGAGAAGGGTCTTT 60045 Query 14417 CCCGTCCCTGG 14427 || || || || Sbjct 60046 CCAGTTCCAGG 60056 >seq17672 Length=10974 Score = 96.9 bits (106), Expect = 4e-15 Identities = 249/372 (67%), Gaps = 18/372 (5%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| ||||| || ||| | ||| || || || Sbjct 5842 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATGTCAGCCCTGTTAGTTGCGGC 5783 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || | || ||||| |||| ||||| |||||||| |||||||| || ||||| Sbjct 5782 AATTACGATAATACCCGT---GTTACCCTCAAAACCATCCATTTCAGTCAAAAGCTGATT 5726 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACC 14238 | ||||| || | ||||||||| | | |||||| | || || | || Sbjct 5725 AAGAGTTTGCTCCCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGT---CC 5669 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--A 14296 || || ||||||||||| | || || |||||||| ||| || ||| |||| | Sbjct 5668 AACAGCATCAATTTCATCCACAAAGACAATACATGGGGCATTCTCCTTGGC--CTTCTTA 5611 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || |||| |||||||||||| |||||||| || || || | | | Sbjct 5610 AAAAGATCACGAACTCGAGAGGCACCGACACCAACAAACATTTCAACGAACTCAGAACCT 5551 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 ||| || | || ||| || ||| || |||||| || || || ||| || || ||||| Sbjct 5550 GAA-ATGGAGAAGAATGGCACGCCAGCTTCACCGGCAATTGCCTTGGCAAGAAGAGTCTT 5492 Query 14416 CCCCGTCCCTGG 14427 || || || || Sbjct 5491 TCCAGTTCCAGG 5480 >seq1980 Length=193800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/280 (67%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| | |||||||| ||||| || | |||||||| || Sbjct 65759 AAACCCATCCATCTCAGTCAACAACTGATTGATTGTTTGCTCTCTCTCATCATTTCCACC 65818 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 65819 TCCAAGACCAGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATGAACACAATGCA 65878 Query 14272 TGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || ||| |||| || || || | ||| | |||||| |||||||||| Sbjct 65879 AGGCGCCTTGGATTTC----GCCTTATCGAATAAATCCCTTACTCTCGATGCACCGACAC 65934 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||||| ||| ||||| | | || | ||| || || || ||| || ||| | Sbjct 65935 CGACAAACAACTCGACAAACTCCGAAGCAGCGCATGAGAAAAACGGTACGCCAGCTTCTC 65994 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || | |||| || | || ||||| || || || || Sbjct 65995 CTGCTACAGCTCTCGCCAATAGTGTCTTTCCAGTACCAGG 66034 >seq2164 Length=171303 Score = 82.4 bits (90), Expect = 9e-11 Identities = 247/372 (66%), Gaps = 17/372 (5%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| ||||| || || | ||| || || || Sbjct 3517 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATGTCGGCCCTGTTGGTTGCTGC 3458 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || | ||| || || |||| || || |||||||| |||||||| || | || Sbjct 3457 AATTACGATGATACCTGT---GTTACCCTCGAAACCATCCATTTCAGTCAAAAGCTATTT 3401 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACC 14238 || ||||| || | ||||||||| | | |||||| | || |||| || Sbjct 3400 GAGAGTTTGCTCCCTCTCATCATTCCCTCCACCAATACCAGTTCCTCT---TTGCCGTCC 3344 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA-CTTCAA 14297 || || ||||||||||| | || || || ||||| ||| || ||| ||| || Sbjct 3343 AACAGCATCAATTTCATCCACAAAGACAATGCATGGGGCATTCTCCTTGGCCTTCTTGAA 3284 Query 14298 AGATATCTCGCA-CTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 | | ||| || | ||| |||||||||||| |||||||| || ||||| | || | Sbjct 3283 A-AGATCACGAAACTCGAGAGGCACCGACACCAACAAACATTTCAACAAACTCGGAACCT 3225 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 ||| || | || ||| || || || |||||| || || || ||| || |||||||| Sbjct 3224 GAA-ATGGAGAAGAATGGCACTCCAGCTTCACCAGCAATTGCCTTGGCAAGAAGGGTCTT 3166 Query 14416 CCCCGTCCCTGG 14427 || || || || Sbjct 3165 TCCAGTTCCAGG 3154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617836183665280