Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq6422 86.0 3e-12 seq12846 84.2 1e-11 >seq6422 Length=82514 Score = 86.0 bits (94), Expect = 3e-12 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAA-ATTAATATTGTTTGAACCAATAAAATT 65145 || || ||||| ||||||||||| | || || || |||||||| || | ||||| Sbjct 3713 CGAGTACCAAATTGACCATTTGG-ACGAAGAACGTTTATATTGTTGCTGCCCACAAAATC 3771 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAAT 65204 |||||||||||||||| || | | ||| |||| |||||| ||||| || | |||| Sbjct 3772 TTGAGCCATTCCGATAA-TGGTACTCATAAGACTCTGTTCACCATGATGGTAAGCAGAAT 3830 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 | || || ||||| || |||||||| ||| ||| || || ||||| |||||| Sbjct 3831 GCTCTGAAACATAACCTGAAAATTGAGAAACCTTTGCCTCTTTTACAAAATTTCTTTTAA 3890 Query 65265 ATGCA 65269 | ||| Sbjct 3891 AGGCA 3895 >seq12846 Length=30717 Score = 84.2 bits (92), Expect = 1e-11 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAA-TTAATATTGTTTGAACCAATAAAATT 65145 || |||||||| |||||||| || | || || || |||||||| |||| ||||| Sbjct 6593 CGAGTTCCAAATTGACCATTCGG-ACGAAGAACGTTTATATTGTTACTGCCAACAAAATC 6535 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAAT 65204 ||||||||||| |||| || | | ||| |||| |||||| ||||| || | |||| Sbjct 6534 TTGAGCCATTCCAATAA-TGGTACTCATAAGACTCTGTTCACCATGATGGTAAGCAGAAT 6476 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 | || || ||||| || |||||||| |||||| Sbjct 6475 GCTCTGAAACATAACCTGAAAATTGAGAAACTTT 6442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235457427343200