Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12078 131 2e-25 seq10024 122 1e-22 seq7959 84.2 2e-11 >seq12078 Length=35335 Score = 131 bits (144), Expect = 2e-25 Identities = 298/443 (67%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 |||||||| || ||||||| || || ||||| || || || |||||| ||||| Sbjct 4156 CGACGAGCGCCACTTCATCACTCACGTTCTCGCCTTTTTTGCAGCCTCTGATGGTATTGT 4215 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | |||||| | | | | || || || ||||| || ||||||| || | || Sbjct 4216 CCTTGAAAATCTTGCCGTCCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTT 4275 Query 59798 CTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 ||||| | ||| ||| || || |||||||||||||| |||| || | ||| Sbjct 4276 CTACGGTTTCCAGATCGC-CATTGAAAATATCCACTCCGAGATGTACAGTCTGCTCCTCG 4334 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | |||| ||| | || || ||| | | || ||||||||| | || ||| | | Sbjct 4335 AGACTTACATCAAAGATTCCGAGGAAAAGAGTCGCCTCTTCCGTGCCGTTGAAACGGTAC 4394 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTT 59975 | || || |||| || || ||||| ||| | ||||| | |||| | | || Sbjct 4395 CGTGC-GTGGCTAAAAAGGCCGAGTGGGCTATGAAATGGATCAACGGCGGAGAAACTTTC 4453 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || | ||||||||||| ||| | || || ||||| |||||||| ||||| Sbjct 4454 GCCGAGCGGTTGATAGCTTTTGCTTGCATTGAGGGGATCTTTTTCTCTGGAAGTTTCTGC 4513 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || || || ||| | |||||||| || | ||||| || | | |||||| |||||| | Sbjct 4514 GCCATATTTTGGTTGAAAAAGCGCGGGTTGATGCCTGGATTAACTTTCTCAAACGAGTTA 4573 Query 60096 ATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || |||||||| Sbjct 4574 ATCTCGCGAGATGAAGGCCTCCA 4596 >seq10024 Length=53621 Score = 122 bits (134), Expect = 1e-22 Identities = 306/460 (67%), Gaps = 4/460 (1%) Strand=Plus/Plus Query 59661 TGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCG 59720 ||||| | ||||| |||||||| || ||||||| || || ||||| || || Sbjct 14525 TGGGAAACGCTCACCGCCGACGAGCGCCACTTCATCACACACGTTCTCGCCTTTTTTGCT 14584 Query 59721 GCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATT 59780 || ||||| || || | |||||| | | | | || || || ||||| || Sbjct 14585 GCCTCCGATGGTATCGTCCTTGAAAATCTTGCCGTCCGGTTCATGAAAGAGGTCCAAATC 14644 Query 59781 GCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGAC 59839 ||||||| || | ||||| | | ||| ||| || || |||||||||||||| Sbjct 14645 TCCGAGGCGCGTGCTTTCTATGGTTTCCAGATCGC-CATTGAAAATATCCACTCCGAGAT 14703 Query 59840 GTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCG 59899 |||| || | |||| | | |||| ||| |||| || ||| | || ||||| Sbjct 14704 GTACAGTCTGCTTCTCGAGACTTACATCAAAGATTCGGAGGAAAAGAGCCGCCTCTTCCG 14763 Query 59900 TGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA 59958 |||||| || || || || || || ||||||| || ||||| ||| | ||||| | Sbjct 14764 TGCCATTGAAACGGTGCCGTGC-GTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCA 14822 Query 59959 GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCT 60018 |||| | | || || | || | || |||||||| ||| | || || || || | Sbjct 14823 ACGGCGGAGAAACTTTCGCCGAGCGGTTGATCGCTTTTGCTTGCATTGAGGGGATATTTT 14882 Query 60019 TCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGA 60078 ||||||| ||||| || || || ||| | |||||||| || | ||||| || | | Sbjct 14883 TCTCTGGAAGTTTCTGCGCCATATTTTGGTTGAAAAAGCGCGGGTTAATGCCTGGATTAA 14942 Query 60079 GTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||| ||| | || || || || || |||||||| Sbjct 14943 CTTTCTCCAATGAGTTAATCTCGCGAGATGAAGGCCTCCA 14982 >seq7959 Length=111033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 62/70 (89%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 55568 TGTCCGAGTTGGTCTAAGGAGGGAGACTTAAGATCTCCTGTGCGCAAGCACGCGTGGGTT 55627 || |||||| ||| ||||| || ||||||||||||| |||||| |||||||||||||||| Sbjct 65536 TGCCCGAGT-GGT-TAAGGGGGAAGACTTAAGATCTTCTGTGCTCAAGCACGCGTGGGTT 65593 Query 55628 CGAACCCCAC 55637 | |||||||| Sbjct 65594 CAAACCCCAC 65603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547993498878720